PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00270.1_g00018.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 318aa    MW: 36184.6 Da    PI: 8.5686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00270.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.41.8e-3041144199
                              EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+kv tpsdv+k++rlv+pk++ae++     +++++++  l +ed+ g +W+++++y+++s++yv+tkGW++Fvk+++L++gD+v 
  Rsa1.0_00270.1_g00018.1  41 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnSSDNNKGLLLNFEDRIGITWSFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVS 126
                              89****************************9666678899********************************************** PP

                              EEE-SS.SEE..EEEEE-S CS
                       B3  82 Fkldgr.sefelvvkvfrk 99 
                              F++  + ++ +l++ + r+
  Rsa1.0_00270.1_g00018.1 127 FQRG-ScNKDKLFIDWKRR 144
                              **65.44788888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-4331150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3238147IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-2439129No hitNo description
PROSITE profilePS5086313.83141145IPR003340B3 DNA binding domain
PfamPF023627.5E-2841144IPR003340B3 DNA binding domain
SMARTSM010192.3E-2241145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK  60
QHAERYFPLD NSSDNNKGLL LNFEDRIGIT WSFRYSYWNS SQSYVMTKGW SRFVKDKKLD  120
AGDIVSFQRG SCNKDKLFID WKRRPKIPDH QVVGAIFPRF YSYPYPQMQA SYERHNLYHQ  180
YQRDLGFGYY VRSMERYDPT AVIESVPVIM QRRAQVATMA SSRGEKRLRL FGVDMECGRG  240
GGGGGGSMNS TEEESSSSGG SISRGGVSMA GVGSLLQLRL VSSEGDESLI AMEAARVDED  300
LHLFTKKGKS SLSFDLDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-61361473116B3 domain-containing transcription factor NGA1
5os9_B8e-61361473116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00270.1_g00018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465284.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-163NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A078J0P60.0A0A078J0P6_BRANA; BnaA04g27480D protein
TrEMBLA0A3P6BW440.0A0A3P6BW44_BRACM; Uncharacterized protein
STRINGBra014415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-152B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]