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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00269.1_g00021.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 370aa MW: 42963.2 Da PI: 6.5282 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00269.1_g00021.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177.3 | 4.2e-55 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat g+W
Rsa1.0_00269.1_g00021.1 10 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeERNEWYFFSHKDKKYPTGTRTNRATMVGFW 94
69****************************.9***************953433332556*************************** PP
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
katg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle
Rsa1.0_00269.1_g00021.1 95 KATGRDKAVYD-KSKLMGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 139
***********.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MESVDQSCSV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIRDIDLYRI EPWDLQERCR 60 IGYEERNEWY FFSHKDKKYP TGTRTNRATM VGFWKATGRD KAVYDKSKLM GMRKTLVFYK 120 GRAPNGQKTD WIMHEYRLES DENAPPQEEG WVVCRAFKKK PTTGQAKNTE TWRSGYFYDQ 180 LPSGTGSGME PLNYVPKRKQ NIFSQDFMFK QELEGSNIGL NFIHCDQFIQ LPQLESPSLP 240 LMQRPVSSTS ITSLEKNHNK FKRPLTEDDE KFNELICSKR KDKKKKSSVM TTDWRALDKF 300 VASQLMSQED GFSDFGVHQE DDNNKTGQRN NEESSNNGID MPTSSLLSDG EEENRFISGL 360 LCTNLDYDLI
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 278 | 285 | KRKDKKKK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189569 | 0.0 | AC189569.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I12, complete sequence. |