PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00255.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 38094.5 Da    PI: 5.9411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00255.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-14131177354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Rsa1.0_00255.1_g00009.1 131 KSHSEAERRRRERINTHLANLRSILPNT-----TKTDKASLLAEVIQHMKEL 177
                              79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.71128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.29E-4131180No hitNo description
PfamPF000101.9E-11131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14132185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14132191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.2E-4213262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0016036Biological Processcellular response to phosphate starvation
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLQHHPQ ILPWSSLPSF DPSYFPSNQT RHPDPVPYFN  60
RRASSSSFFD YTDGFVSPPS MDRHHPNHLR VLSEALGPIM RRGSSFGFED EIMGKLSAQE  120
VMDAKALAAS KSHSEAERRR RERINTHLAN LRSILPNTTK TDKASLLAEV IQHMKELKRQ  180
TSLITDTSQL PTECDDLTVD STYNDEEGNL MIRVSFCCED RTELMHDIIT ALKSLHLRTL  240
KAEIATVGGR IKNVLFLSRE DDDEYRRNFD GIDVDNDDEE KRCNRVSSIE EALKAVIEKC  300
VKNDDDNNNL DKSSSGSTKR QRTSKMVNRG YN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00255.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618371.10.0PREDICTED: transcription factor AIG1-like
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLA0A0D3AVW50.0A0A0D3AVW5_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RE410.0A0A3N6RE41_BRACR; Uncharacterized protein
TrEMBLA0A3P6DFG20.0A0A3P6DFG2_BRAOL; Uncharacterized protein
STRINGBo2g138630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-175basic helix-loop-helix 32
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Jost R, et al.
    Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
    J. Exp. Bot., 2015. 66(9): p. 2501-14
    [PMID:25697796]
  5. Vera-Sirera F, et al.
    A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
    Dev. Cell, 2015. 35(4): p. 432-43
    [PMID:26609958]
  6. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]