PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00250.1_g00017.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 196aa MW: 22222.3 Da PI: 9.8753

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00250.1_g00017.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	62	116	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa+ k Rsa1.0_00250.1_g00017.1 62 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 116 78889************************************************98 PP
2	HD-ZIP_I/II	118.8	3e-38	62	150	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++evee Rsa1.0_00250.1_g00017.1 62 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEE 147 69************************************************************************************ PP HD-ZIP_I/II 87 Lre 89 Lr+ Rsa1.0_00250.1_g00017.1 148 LRA 150 *94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-18	45	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-18	46	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	58	118	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	60	122	IPR001356	Homeobox domain
CDD	cd00086	4.66E-15	61	119	No hit	No description
Pfam	PF00046	6.3E-16	62	116	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
SMART	SM00340	4.1E-21	118	161	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.3E-9	118	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MAILPENYSN LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNRLPSSEDD EELSLGGSAP 60 PRKKLRLTRE QSRLLEDSFR QNHTLNPKQK EALAKHLMLR PRQIEVWFQN RRARSKLKQT 120 EMECEYLKRW FGSLTEQNHR LHREVEELRA MKVGPSTAAT ASSLTMCPRC ERVTTAASPS 180 MAAPAKKTLP LKEREH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00250.1_g00017.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	0.0	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437350.1	1e-143	PREDICTED: homeobox-leucine zipper protein ATHB-17-like isoform X2
Swissprot	Q8S9N6	1e-120	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A1J3EZD3	1e-129	A0A1J3EZD3_NOCCA; Homeobox-leucine zipper protein ATHB-17
STRING	A0A087GU16	1e-128	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	7e-99	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]