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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00250.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 439aa MW: 47913 Da PI: 8.9091 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 117 | 137 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+ + G Ck Gd+C+F H+ Rsa1.0_00250.1_g00012.1 117 VCKFWKA-GNCKKGDQCSFLHS 137 5******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-6 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 112 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-7 | 112 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00320 | 1.9E-4 | 143 | 182 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.56E-43 | 144 | 191 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 9.9E-43 | 145 | 433 | IPR015943 | WD40/YVTN repeat-like-containing domain |
PROSITE profile | PS50294 | 19.776 | 150 | 354 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.984 | 150 | 191 | IPR001680 | WD40 repeat |
Pfam | PF11715 | 6.9E-6 | 165 | 198 | No hit | No description |
PROSITE pattern | PS00678 | 0 | 169 | 183 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.1E-8 | 169 | 183 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 94 | 220 | 259 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.56E-43 | 229 | 434 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 7.8E-4 | 267 | 305 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 4.5E-5 | 271 | 305 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.542 | 289 | 314 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 292 | 306 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.1E-8 | 292 | 306 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 5.9E-6 | 308 | 345 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 9.2E-4 | 310 | 345 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.275 | 315 | 354 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.1E-8 | 332 | 346 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 100 | 351 | 392 | IPR001680 | WD40 repeat |
SMART | SM00320 | 23 | 395 | 432 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MCVYSMSYKA PRRYYERRNF GVERRQDFAA DVVPRRPYEN KGPNKSRNLV WTASDANTAR 60 KNGSTYGSTK PQVPGAASSV SNLQRKVAAY GQRSSSVSDT RGWGSNDRGS PKRKECVCKF 120 WKAGNCKKGD QCSFLHSWTS LPGMVMVAAL EGHKKDLKGI ALPQGSDKLF SASSDGTLRI 180 WDCHTGQCVH TINLQAEAGS LMSEGPWVFL GLPNAVKAFN VQTSKDLHLN GVVGQVRAMT 240 AGNGMLFAGT SSGSISVWKA TETESDPFTY LTSLEGHHSG EVTCFIVGGQ RLYSGSVDRT 300 IKVWDLNTLE CTMTLRQHTD TVTSLLCWDQ YLISSSLDGT IKVWSSSEND SLKVTHTRRQ 360 EQSVHTLCGM SDADGKPIVF CSYENGTVSI CDLPSFEERG KMFSTNTVGA ITVGPEGLLF 420 NGDKSGKLRV WSLAGTKAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ovp_B | 9e-18 | 135 | 397 | 113 | 393 | F-box/WD repeat protein 7 |
2ovq_B | 9e-18 | 135 | 397 | 113 | 393 | F-box/WD repeat protein 7 |
2ovr_B | 9e-18 | 135 | 397 | 113 | 393 | F-box/WD repeat protein 7 |
6g6m_A | 5e-18 | 150 | 433 | 11 | 323 | Tako8 |
6g6n_A | 5e-18 | 150 | 433 | 11 | 323 | Tako8 |
6g6n_B | 5e-18 | 150 | 433 | 11 | 323 | Tako8 |
6g6n_C | 5e-18 | 150 | 433 | 11 | 323 | Tako8 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00250.1_g00012.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485361.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1 | ||||
Swissprot | Q9FKR9 | 0.0 | C3H59_ARATH; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | A0A3P6CWH4 | 0.0 | A0A3P6CWH4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g140040.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4048 | 18 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40880.1 | 0.0 | C3H family protein |