PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00244.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 308aa    MW: 34442.6 Da    PI: 7.9986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00244.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-3232133199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Rsa1.0_00244.1_g00004.1  32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 117
                              89****************************66677899************************************************ PP

                              EE-SSSEE..EEEEE-S CS
                       B3  83 kldgrsefelvvkvfrk 99 
                              ++    + +l++ ++r+
  Rsa1.0_00244.1_g00004.1 118 QRCV-GDSRLCIDWRRR 133
                              *653.566679999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-4127134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3029128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-2630128No hitNo description
SMARTSM010199.2E-2632134IPR003340B3 DNA binding domain
PROSITE profilePS5086315.25632134IPR003340B3 DNA binding domain
PfamPF023629.2E-3032133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMTTLSLGRE GEEDKDAEAK KPIEEVEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL  60
DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRC  120
VGDSRLCIDW RRRPKVPDYP TSTAHFAAGA MFPRFYSFPT ATTSTCYNLY NHQQPRHHHI  180
GYGYPLIPRE FGYGYFVRSV DQRAVVADPL VIESVPVMMH GGARVSQEVV GTAGKRMRLF  240
GVDMECGESG VTNSTEEESS SSGGSLPRAG GGGASSSSSL FQLRLGSSSE DDHFSKKGKS  300
SLPFNLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-72271363116B3 domain-containing transcription factor NGA1
5os9_B2e-72271363116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00244.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482618.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_018482646.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-159NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A078IFR40.0A0A078IFR4_BRANA; BnaA04g26820D protein
TrEMBLA0A397ZR970.0A0A397ZR97_BRACM; Uncharacterized protein
STRINGBo4g197410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-141B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]