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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00240.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 361aa MW: 37570.2 Da PI: 7.5808 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00240.1_g00001.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 225 | 1.5e-69 | 131 | 281 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelks.kkqsals 87
g+asCqdCGnqakkdCah RCRtCCksrgfdC thv+stWvpaakrrerq+ql++ + ++ + + ++ +kr+re+ +++sal
Rsa1.0_00240.1_g00001.1 131 GGASCQDCGNQAKKDCAHVRCRTCCKSRGFDCPTHVRSTWVPAAKRRERQHQLSTVQPQTHQPRgDSGVPKRHRENLPaATSSALV 216
779*************************************************9999877777665778899999996515667889 PP
DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+t++++++++ le+ ++P+evss+avfrcvrvssv+dgeeelaYqtavsigGh+fkG+Lyd+G+
Rsa1.0_00240.1_g00001.1 217 CTRIPTHNAS-GLEVGDFPAEVSSPAVFRCVRVSSVEDGEEELAYQTAVSIGGHIFKGVLYDKGPG 281
9999999765.999**************************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MAGFFSLDGG GRGGGGGNSQ EEHHTNTNTN PPPPVSEAWL WYRNPNVNAN APSSTNAAAL 60 GTLELWQNHS QQEILFQHQQ HQQRLDLYSS AAGLGVGPSN HSQFDISGEN SNAAAGRAAA 120 LMMMRSGGSG GGASCQDCGN QAKKDCAHVR CRTCCKSRGF DCPTHVRSTW VPAAKRRERQ 180 HQLSTVQPQT HQPRGDSGVP KRHRENLPAA TSSALVCTRI PTHNASGLEV GDFPAEVSSP 240 AVFRCVRVSS VEDGEEELAY QTAVSIGGHI FKGVLYDKGP GSSGGYNVLA AGESSSGGGG 300 GHQLNLITAG SVTVATASSS TPNAGGIGSS SAAAYNDPAA LYPTPINTFM AGTQFFPNPR 360 S
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205262 | 0.0 | GU205262.1 Brassica rapa subsp. pekinensis stylish (STY1-1) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G51060.1 | 1e-130 | Lateral root primordium (LRP) protein-related |