PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00238.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 380aa    MW: 42931.3 Da    PI: 9.9091
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00238.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.7e-1863115254
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L  rq+ vWFqNrRa+
  Rsa1.0_00238.1_g00014.1  63 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRAR 115
                              78889***********************************************9 PP
2HD-ZIP_I/II78.79.3e-2663119157
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktk 57 
                              +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR   k
  Rsa1.0_00238.1_g00014.1  63 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARGERK 119
                              69***************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1745113IPR009057Homeodomain-like
SuperFamilySSF466892.99E-1748116IPR009057Homeodomain-like
PROSITE profilePS5007117.23259119IPR001356Homeobox domain
SMARTSM003892.1E-1561123IPR001356Homeobox domain
CDDcd000861.01E-1462115No hitNo description
PfamPF000465.3E-1563115IPR001356Homeobox domain
PfamPF021831.1E-8302336IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.7E-21302345IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAIIPEQSSH LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNRLPSSSED DEELSHGGSA  60
PPRKKLRLTR EQSRLLEDSF RQNHTLNPKQ KEALAKHLML RPRQIEVWFQ NRRARGERKP  120
SDLSLKKHIA VVSVSGRWVR LAPPSVRPHP LKAFFAFFFF FFSFAAAMHA FLRWWFAFGF  180
PGTGGVFTVR HRSMFLGPYR FFVGSGRRLS SLGEGFELCK VDSCGGKWPN SEELSETVVV  240
VIIPVFPVIG LCFVQQRRLQ FEEEAGDSRF RRGIGCDPGG DNRQLLEMMM LLPLTPSMSK  300
LKQTEVECEY LKRWFGSLTE QNYRLHREVE ELRAMKVGPA TVTSASNLTM CPRCERVTTA  360
ASPSLAVPSQ KTFPPKESEH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00238.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534481e-129AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481701.13e-75PREDICTED: homeobox-leucine zipper protein ATHB-17-like
SwissprotQ8S9N61e-64ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLM4E7Y21e-71M4E7Y2_BRARP; Uncharacterized protein
STRINGBra024888.1-P2e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-46homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]