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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00237.1_g00034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35250.5 Da PI: 4.7326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+A +a++ a+++++g Rsa1.0_00237.1_g00034.1 19 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 69 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-11 | 19 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-31 | 20 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.761 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 20 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 20 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.9E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.67E-31 | 21 | 79 | No hit | No description |
PRINTS | PR00367 | 9.9E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVEMSLGSDK EKKKGSKQPV YRGVRMRSWG KWVSEIREPR KKSRIWLGTF PTAEMAMRAH 60 DVAALSIKGA SAILNFPELS DSLPRPASLS PRDVRAAATK AALMDFGNST AFRHARCESD 120 MSETASLGKR SESETSETAS FSSSSFSVTS VVDEESMVSD DLVQDSIVEL PSLGTSLDES 180 NEFVFFDSLE DLVFMPSRSL SGALDDFTLW ESVTPDSRCV VACEIGQEEN LGRDLRSVSI 240 GVVNEVERES KLFSDTRTTG EIADSVQLSR FCKQNRDCEV LRFPATNSDP FVGKGNLCSQ 300 SGTTEGLQHG RLMFNMENMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 15 | 78 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00237.1_g00034.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189565 | 1e-128 | AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480622.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor ERF043-like | ||||
Swissprot | Q9M080 | 1e-84 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A0D3DHD8 | 1e-109 | A0A0D3DHD8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ELM7 | 1e-109 | A0A3P6ELM7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g115860.1 | 1e-110 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 1e-81 | ERF family protein |
Publications ? help Back to Top | |||
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