PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00237.1_g00023.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 671aa    MW: 76091.5 Da    PI: 8.7488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00237.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-163163961398
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              ++rl +pkkf + ++ k   +k +tl+++sg +++v l  +  +++   ++ GW +Fvk++ L e D +vFk++g+sef   v +f
  Rsa1.0_00237.1_g00023.1 316 HNRLAIPKKFSTYCKRK--LPKIVTLKSPSGAKYNVGL--EEDDEKtLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEF--EVLIF 395
                              789*******9767755..8899***************..777766699***********************9998888..88887 PP

                              - CS
                       B3  98 r 98 
                              +
  Rsa1.0_00237.1_g00023.1 396 D 396
                              6 PP
2B361.91e-19570667199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                              f+ v+++s+v +++ l +p +  +++++++  s+++++ + +  +W++k+++ ++sgr  +++GWk+F+k+n+L+egD++vF+   
  Rsa1.0_00237.1_g00023.1 570 FVVVMKRSHVVSKCYLNIPVQWSTRYMSPE--SQDIVM-QVDQTKWQLKFSFYGSSGRGGISTGWKKFAKDNNLCEGDVCVFEPAk 652
                              7899**********************9884..556775.55999**************99***********************553 PP

                              SS.SEE..EEEEE-S CS
                       B3  86 gr.sefelvvkvfrk 99 
                               + + f+l+v +fr+
  Rsa1.0_00237.1_g00023.1 653 PEvKPFHLNVYIFRA 667
                              557999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF042785.0E-10910265IPR007378Tic22-like
SuperFamilySSF1019365.89E-20302397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704304398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-20305396IPR015300DNA-binding pseudobarrel domain
CDDcd100175.82E-17306396No hitNo description
SMARTSM010193.6E-19307398IPR003340B3 DNA binding domain
PfamPF023625.6E-14316396IPR003340B3 DNA binding domain
CDDcd100171.26E-20570666No hitNo description
PfamPF023621.1E-17570667IPR003340B3 DNA binding domain
SuperFamilySSF1019365.62E-20570666IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20570669IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.267570668IPR003340B3 DNA binding domain
SMARTSM010198.0E-22570668IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEPTVKPNPL LSFSSFLHTH CNRFASDLSA RFEDTTKRFA ESTTNRRFSP PPPPFASVSQ  60
SSKPSSTAAT LNPSHVAKAL AGTSVFTVSN TNNEFVLISD PTGDKSIGLL CFRQEDAEAF  120
LAQARLRRRE LKANAKVVPI NLDQVYLLKV EGISFRFLPD PIQIKNALEL KSSSSKNGFD  180
GVPVFQSELL VVRKKNKRYC PVYFSKEDIE RELSKYTRAS RADQQIMVGS LEDVLRKMER  240
SEKNSGWEDV IFIPPGRSYA QHMQESQEPL ILARWQEQKK KKMEENCEDC MRWEEQLYWT  300
HFQTVHFSQL LLPGFHNRLA IPKKFSTYCK RKLPKIVTLK SPSGAKYNVG LEEDDEKTLA  360
FRCGWDKFVK DHSLHESDLL VFKFNGSSEF EVLIFDGDTL CEKSTSYFVR KCGHAEKTSR  420
ARDFTVTSSR SPKRYINNHD DVETTVNQQQ PVKTSPVGNE LDDLIDIDID TMLNQELVVP  480
QTGLEQEEHI NSDIDTDSGP IPVISPTSKG PISEGRYPIG VYKKMRGQIS ISDLDSKAEM  540
VSSGSRKRIS ETCKRKALSL AKRAISPKGF VVVMKRSHVV SKCYLNIPVQ WSTRYMSPES  600
QDIVMQVDQT KWQLKFSFYG SSGRGGISTG WKKFAKDNNL CEGDVCVFEP AKPEVKPFHL  660
NVYIFRAAEG E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00237.1_g00023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484959.10.0PREDICTED: B3 domain-containing protein REM16
SwissprotQ8RYD11e-161REM16_ARATH; B3 domain-containing protein REM16
TrEMBLM4F7F00.0M4F7F0_BRARP; Uncharacterized protein
STRINGBra037010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM905223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-157B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]