PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00233.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 356aa    MW: 39801.4 Da    PI: 8.2199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00233.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-3184141260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ ++++ ei+Y+g+H+h+k
  Rsa1.0_00233.1_g00017.1  84 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKVFERSH-EGQINEIVYKGKHDHPK 141
                              8***************************************9.***************85 PP
2WRKY106.61.3e-33246304159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Rsa1.0_00233.1_g00017.1 246 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVVTTYEGKHNHD 304
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.95178142IPR003657WRKY domain
SuperFamilySSF1182901.83E-2482142IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-2683142IPR003657WRKY domain
SMARTSM007741.7E-3283141IPR003657WRKY domain
PfamPF031062.2E-2384140IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37231306IPR003657WRKY domain
SuperFamilySSF1182901.57E-29238306IPR003657WRKY domain
PROSITE profilePS5081138.572241306IPR003657WRKY domain
SMARTSM007741.6E-38246305IPR003657WRKY domain
PfamPF031065.4E-26247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDPDCAESKR DLSGGGARYK LMSPPKLPIS RSTCITTIPP GLSPTSFLES PVLLSNNIKT  60
TPSGFERSDH DESGGSAPSP ILADDGYNWR KYGQKHVKGS EFPRSYYKCT HPNCEVKKVF  120
ERSHEGQINE IVYKGKHDHP KPQPSRRNSG GLVMPAAQEE RPDKCSSFNG RDGNYTYNLS  180
PPVEQNGNDD GGDHAVSKRN NDDVDENDPF SKRRKVDGSV EITALVKQPI REPRVVVQTL  240
SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTATGCPVR KHVERASHDP KAVVTTYEGK  300
HNHDVPTSKS NNNSHHDMSA PIFRREETST DRVSLDLVLE SHLVVLIIHQ MSICII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3782306877Probable WRKY transcription factor 4
2lex_A3e-3782306877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00233.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931360.0KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132371.11e-167PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-134WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM4EJK51e-165M4EJK5_BRARP; Uncharacterized protein
STRINGBra028971.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-137WRKY family protein