PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00226.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 391aa    MW: 42674.1 Da    PI: 9.9689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00226.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-06931123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C  C+k F+++ +L  H+r+H
  Rsa1.0_00226.1_g00013.1  9 YICDTCKKEFPTPKSLYGHQRVH 31
                             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.68E-7737No hitNo description
PROSITE profilePS5015713.152936IPR007087Zinc finger, C2H2
SMARTSM003550.0037931IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5935IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMNNDNIFYI CDTCKKEFPT PKSLYGHQRV HSREKQLERA LKKTRTLGQG TSNSVALGGY  60
SLSNYDKYLC LSRGPIESMS LKNTTTFPSL NSGVTNANMP VFRHPVPPDR NTSYGFSSGT  120
PLVTHNHNRP TLSNLNRPGG VSFGPFKSGG HGSSRAYPYS LFNGGITRAP PATPYRSRVP  180
LPSYRYNNSH DRSLGSANSI GRLSNNNNGS SQGSLSLELS LGPSKSMGDS NNNSSSQDSL  240
SLALSLGPSN SNGSSNNNSS AYPSLITGGE TRNMNMPVRP RASQFHFHSL NPLDSITRNV  300
HLSHPPPTTN MNRLVRPRAS RFHFHSHNPL DSIIRNVPLS HHLPTTNLHD DNNVSGSSLI  360
AKEKDNVVVL DDDDGNVVIE YHDEDQHAGR G
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00226.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619702.11e-120PREDICTED: rho GTPase-activating protein gacO-like
TrEMBLA0A3P6D6601e-123A0A3P6D660_BRAOL; Uncharacterized protein (Fragment)
STRINGBra022712.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2355244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.18e-07C2H2 family protein