PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00224.1_g00028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 548aa    MW: 58728.5 Da    PI: 7.5535
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00224.1_g00028.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702204.62.8e-633475023154
                   DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqs 84 
                              sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + ++as+++ +++     ++++++  +++s++++
  Rsa1.0_00224.1_g00028.1 347 SGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTTASTSSGTKKprivGSQQQQQATSHTSTSNT 432
                              7899**********************************************999888876665555444333333333333444444 PP

                   DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                +s ++ss+ +  e   + +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle 
  Rsa1.0_00224.1_g00028.1 433 PPQSFETSSSRQDGEGCREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 502
                              44444444444444444455***********************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF140091.3E-82132IPR025322Protein of unknown function DUF4228, plant
PfamPF051421.3E-56349501IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.7E-26351393IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-30452500IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDDCLIPGQT YFVLPIERFA YIVLTTSCLS IFNSNIQNGP STKPPPLSFT APSSPPPFEY  60
SKGPNGKILI KVSPHFIMSL ICKRRNIAED EVIIDCGESK DICNSPELKK HYDQLVGTRE  120
HLWSPKLQTI SEHETRVSPL RLVVVHEQVD NLHVYLVFQL AVATTRRHNL PTSDSGAFTD  180
WAATTTTSSR ATEDLSLGFN AGPAVVHGGL ASSPAAAGVP SWPLGSSVRY GLQSSAAAAA  240
EMGMVGLRDV YLVSPAYHHH HQNAGVVTGS DQINSNAALG VGMIPLLTAA PPHQQNVEDT  300
DINFLGDGRR WQNSNDNNQT QYLHFKSAHQ MAVASSSNNS GSGSAASGTA TCQDCGNQAK  360
KECKQRRCRT CCKSRGFDCS THVKSTWVSA ARRRERQVMP TTASTSSGTK KPRIVGSQQQ  420
QQATSHTSTS NTPPQSFETS SSRQDGEGCR EAWPGQVRAA AVFKCVRVTA VEDGDDEYAY  480
QAVVKIGGHV FKGFLYDQGL EPKEGFPNMS DLHLGGGANS TNGVSASQPI IDPPNVYGGG  540
GSGGGFYG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00224.1_g00028.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442186.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-152LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A397XVM50.0A0A397XVM5_BRACM; Uncharacterized protein
STRINGAT5G12330.40.0(Arabidopsis thaliana)
STRINGXP_006289475.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.40.0Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]