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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00224.1_g00028.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 548aa MW: 58728.5 Da PI: 7.5535 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00224.1_g00028.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 204.6 | 2.8e-63 | 347 | 502 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqs 84
sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + ++as+++ +++ ++++++ +++s++++
Rsa1.0_00224.1_g00028.1 347 SGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTTASTSSGTKKprivGSQQQQQATSHTSTSNT 432
7899**********************************************999888876665555444333333333333444444 PP
DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+s ++ss+ + e + +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle
Rsa1.0_00224.1_g00028.1 433 PPQSFETSSSRQDGEGCREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 502
44444444444444444455***********************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MDDCLIPGQT YFVLPIERFA YIVLTTSCLS IFNSNIQNGP STKPPPLSFT APSSPPPFEY 60 SKGPNGKILI KVSPHFIMSL ICKRRNIAED EVIIDCGESK DICNSPELKK HYDQLVGTRE 120 HLWSPKLQTI SEHETRVSPL RLVVVHEQVD NLHVYLVFQL AVATTRRHNL PTSDSGAFTD 180 WAATTTTSSR ATEDLSLGFN AGPAVVHGGL ASSPAAAGVP SWPLGSSVRY GLQSSAAAAA 240 EMGMVGLRDV YLVSPAYHHH HQNAGVVTGS DQINSNAALG VGMIPLLTAA PPHQQNVEDT 300 DINFLGDGRR WQNSNDNNQT QYLHFKSAHQ MAVASSSNNS GSGSAASGTA TCQDCGNQAK 360 KECKQRRCRT CCKSRGFDCS THVKSTWVSA ARRRERQVMP TTASTSSGTK KPRIVGSQQQ 420 QQATSHTSTS NTPPQSFETS SSRQDGEGCR EAWPGQVRAA AVFKCVRVTA VEDGDDEYAY 480 QAVVKIGGHV FKGFLYDQGL EPKEGFPNMS DLHLGGGANS TNGVSASQPI IDPPNVYGGG 540 GSGGGFYG
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |