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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00223.1_g00014.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
G2-like |
Protein Properties |
Length: 287aa MW: 31073.4 Da PI: 5.6035 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00223.1_g00014.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 108.1 | 4.6e-34 | 15 | 69 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
Rsa1.0_00223.1_g00014.1 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
79****************************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MEADDGGNNS GHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTDKKESGD VLSGLDGSPG TQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ELGESSAPVT GESDPATPAP TSEFPLQGKS 180 GKECEPDKSL SVEESHSSYR EALTPDSGCN IGSQDESAGE ERSSKKPRLM RGGAAGYTSE 240 MVVAHPILES GLNSSYHQSD HALAFDVPST SLLGAQNGLD NVSGDDL
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j4r_A | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF594406 | 0.0 | KF594406.1 Suaeda glauca MYB transcription factor mRNA, complete cds. |