 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00221.1_g00026.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
CO-like |
| Protein Properties |
Length: 334aa MW: 37665.7 Da PI: 6.4471 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00221.1_g00026.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 16.6 | 1.7e-05 | 15 | 47 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
+ r+C+ +e+ + +C+ ++ lC C + H
Rsa1.0_00221.1_g00026.1 15 QHRICDYCESSVALVYCKADSAKLCLACDNKVH 47
6789*************************9988 PP
|
| 2 | zf-B_box | 21.8 | 3.8e-07 | 61 | 102 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
C+ +++ + + fC + ++ lC++C ++H + H+++pl
Rsa1.0_00221.1_g00026.1 61 LCDSCHDSPSSVFCDTESSVLCQNCDWQHHTSssslHSRRPL 102
7***************************88668899988775 PP
|
| 3 | CCT | 59 | 1.6e-20 | 290 | 333 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k++
Rsa1.0_00221.1_g00026.1 290 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKSD 333
899**************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MERGGEEEEG SHQQQHRICD YCESSVALVY CKADSAKLCL ACDNKVHVTN QLFSKHFRSL 60
LCDSCHDSPS SVFCDTESSV LCQNCDWQHH TSSSSLHSRR PLEGFSGCPS VTELLALVGL 120
DDLTDKALFL PHPGGSSDQT PPQIVSLNDL VASDGSSHNY RAMDVPPLPK NRHATCGRHK 180
DEMIRQLREL SRSEPSCMKY ETLDAELDTS GFLFLEPGND LFSSTFESQV SGLKWLEDQQ 240
ADYYLYSDDN NVNRGGCTQQ QEEQESSPVM VHVSTSTTTR STHEINSLDR NSALSRYKAK 300
KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KSDP
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189634 | 0.0 | AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G47890.1 | 1e-121 | B-box type zinc finger protein with CCT domain |
