PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00221.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 458aa    MW: 48733.2 Da    PI: 8.7187
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00221.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.2e-105578427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                             + C +++rtG C y +rC+F+H+p
  Rsa1.0_00221.1_g00022.1 55 PDCAYYMRTGVCGYASRCRFNHPP 78
                             78********************97 PP
2zf-CCCH38.71.7e-12101123527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              +C+f+++tGtCk+G++CkF+H++
  Rsa1.0_00221.1_g00022.1 101 PCQFYLKTGTCKFGASCKFNHPR 123
                              7********************96 PP
3zf-CCCH36.67.4e-12145169327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +C++f++tG+Ck+G +CkF+H++
  Rsa1.0_00221.1_g00022.1 145 VNECSYFLKTGQCKFGITCKFHHPQ 169
                              678********************97 PP
4zf-CCCH37.83.1e-12291317127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++++tG Ck+G +CkF+H++
  Rsa1.0_00221.1_g00022.1 291 PGEPECQYYLKTGDCKFGTSCKFHHPR 317
                              5799*********************96 PP
5zf-CCCH277.6e-09342362626
                              -SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                              C f+ ++G+Ck+G++CkF H+
  Rsa1.0_00221.1_g00022.1 342 CTFYVQNGFCKFGSTCKFDHP 362
                              ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4835179IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-45178IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-75578IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-55679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-45777IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-696123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-699124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943101124IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10101123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5101123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117142170IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5142169IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9144169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99290318IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5290317IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5295317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5296317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854336364IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5336363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6338364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4341361IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6342362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDMYGRNPTA MNGSHASAPQ WTGPGDAAGL QAESSMWGGL GLGKSETYPE RAGAPDCAYY  60
MRTGVCGYAS RCRFNHPPDR ATVEATVRAT GQYPERLGAL PCQFYLKTGT CKFGASCKFN  120
HPRNAGGSVT HVPLNIYGYP VRQGVNECSY FLKTGQCKFG ITCKFHHPQP AAAAAAAATA  180
TLPPPASAPQ FYPSVQQHHS LMPSPPSSSL RPLLPGSFMQ GPYAPMLLTP PGVLPIQAWS  240
HYSAPVSPAL SPGAAQQATS LYGVTQLSST TPGVYPSGGL VQKEESFPER PGEPECQYYL  300
KTGDCKFGTS CKFHHPRLRV PPTPNCVLSS IGLPLRPGVQ CCTFYVQNGF CKFGSTCKFD  360
HPVGVIRYNP SASSLADAPV APFPLLPSSS SSAAELISGD DPYLSTSRSA SNNISAGLIF  420
SQSGVSVPFN DLQLSTQTSL SLTGTRITRQ GREIRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00221.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441444.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3P6C2I10.0A0A3P6C2I1_BRAOL; Uncharacterized protein
STRINGBra004427.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein