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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00220.1_g00024.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
ERF |
| Protein Properties |
Length: 284aa MW: 31747.4 Da PI: 4.8488 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00220.1_g00024.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 64.3 | 2.5e-20 | 142 | 192 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr ++ +g+++AeIrdp + + +r++lg+f+ta eAa+a+++a+ kl+g
Rsa1.0_00220.1_g00024.1 142 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDQAAFKLRG 192
7********.**********9...4334*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000302 | Biological Process | response to reactive oxygen species |
| GO:0001944 | Biological Process | vasculature development |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009644 | Biological Process | response to high light intensity |
| GO:0010200 | Biological Process | response to chitin |
| GO:0051301 | Biological Process | cell division |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MATPSEASAL SFIKKHLLDE SSPLPNVTTT NPWIASETSS DFSIFGSFDQ TGFDFTEFEI 60
KPEITDSLEF EPEAKAEISL ASNQSFTFQS NPRVVTGSAS RSNRKPALKI EPPNRTEWIQ 120
FATGNPEPEQ LPVHVAEEEK RHYRGVRMRP WGKFAAEIRD PNRRGTRVWL GTFDTAIEAA 180
RAYDQAAFKL RGSKAIVNFP LEAGTWSARA EVGQNKRKRD GEEEEEEVKV AAKVVKTEES 240
HAVETETSSL TAVDDWDLTE FMSMPLLSPL SPHPPFGYPR LSVV
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G17490.1 | 1e-108 | ethylene responsive element binding factor 6 |
