PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00216.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 405aa MW: 44029.3 Da PI: 5.7963

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00216.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	3.9e-31	203	261	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Rsa1.0_00216.1_g00011.1 203 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 261 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-31	196	263	IPR003657	WRKY domain
PROSITE profile	PS50811	32.879	197	263	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-26	200	263	IPR003657	WRKY domain
SMART	SM00774	6.3E-38	202	262	IPR003657	WRKY domain
Pfam	PF03106	6.9E-26	204	261	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MENYQGDLTD VVRGISGGHV LSPELPPPPP SIWPLPQTSP SDLHINPFGD PFVSMTDPLL 60 QELNAVTNSG YFSTADNNNN NNDFLVPKVL QDDQIKSQCS VFPRIRISHS NNTHESSPCN 120 SPAMSAHVFS PAAAASPRGV INVDTNSPRN CILVDGNTFS SQIQISPPPN LGTKRRKSQA 180 KKVVCIPAPA AMNSRSSGEV VPSDLWAWRK YGQKPIKGSP FPRGYYRCSS SKGCSARKQV 240 ERSRTDPNML VITYTSEHNH PWPIQRNALA GSTRSSSNPS SSKSSTATTP SNGPPNNTHF 300 SSSASPSPLS ASAIKDEQRD MELKIVEDDD DNQFAPYRQE LHDQHQPDDF FADLEELEGD 360 SLSMLLSQGV SSDGNNKTTA SDGISDFFGW SGANNSNDDR ESRSL

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MENYQGDLTD VVRGISGGHV LSPELPPPPP SIWPLPQTSP SDLHINPFGD PFVSMTDPLL  60
QELNAVTNSG YFSTADNNNN NNDFLVPKVL QDDQIKSQCS VFPRIRISHS NNTHESSPCN  120
SPAMSAHVFS PAAAASPRGV INVDTNSPRN CILVDGNTFS SQIQISPPPN LGTKRRKSQA  180
KKVVCIPAPA AMNSRSSGEV VPSDLWAWRK YGQKPIKGSP FPRGYYRCSS SKGCSARKQV  240
ERSRTDPNML VITYTSEHNH PWPIQRNALA GSTRSSSNPS SSKSSTATTP SNGPPNNTHF  300
SSSASPSPLS ASAIKDEQRD MELKIVEDDD DNQFAPYRQE LHDQHQPDDF FADLEELEGD  360
SLSMLLSQGV SSDGNNKTTA SDGISDFFGW SGANNSNDDR ESRSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	177	263	2	79	Disease resistance protein RRS1
5w3x_D	4e-25	177	263	2	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00216.1_g00011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018491962.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X3
Swissprot	Q9SA80	0.0	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A3P5YNE2	0.0	A0A3P5YNE2_BRACM; Uncharacterized protein
STRING	Bra041029.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	0.0	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]