PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00215.1_g00013.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 443aa MW: 48648.8 Da PI: 6.9624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00215.1_g00013.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8.3e-05	324	362	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Rsa1.0_00215.1_g00013.1 324 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 362 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.074	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.50E-5	322	366	No hit	No description
SuperFamily	SSF47459	6.67E-11	322	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-8	326	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MDSTNLHQLQ DQLQLVGSSS SSSSLDNNSN PSCYEASSVH QWSPGGISLN SVSLSHNFNN 60 EMLNTRDQNN NNNNNNRTSE CMSLSNIHNH SLIQQDFPLQ WTHNESSYHH HEGLHKVKEE 120 LSSATTSDHQ QGMLRFTDML NSPVVTNYLK INEHKDYTEK LLLNTISSGF PINGDYSSSL 180 PSSSSSSSPS SQSHRGSFSQ IYPSVNISSL SESQKISNIP RPFDMNMQVL DGRLFEGNVL 240 VPPLNSQEIR GNFTPFGLPF HHHLQQTLHH PSSSPGHQME IYSNEPQASE GKRHNFVMAP 300 KAGETASKKP RVQSRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF 360 LQSQIETLSV PYMRASRNRP GKASQLGSLP QEGSEEETRD LRSRGLCLVP LSCMTYVTGD 420 GGDGGGSLGS GFWPTPTGFG GGT

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MDSTNLHQLQ DQLQLVGSSS SSSSLDNNSN PSCYEASSVH QWSPGGISLN SVSLSHNFNN  60
EMLNTRDQNN NNNNNNRTSE CMSLSNIHNH SLIQQDFPLQ WTHNESSYHH HEGLHKVKEE  120
LSSATTSDHQ QGMLRFTDML NSPVVTNYLK INEHKDYTEK LLLNTISSGF PINGDYSSSL  180
PSSSSSSSPS SQSHRGSFSQ IYPSVNISSL SESQKISNIP RPFDMNMQVL DGRLFEGNVL  240
VPPLNSQEIR GNFTPFGLPF HHHLQQTLHH PSSSPGHQME IYSNEPQASE GKRHNFVMAP  300
KAGETASKKP RVQSRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF  360
LQSQIETLSV PYMRASRNRP GKASQLGSLP QEGSEEETRD LRSRGLCLVP LSCMTYVTGD  420
GGDGGGSLGS GFWPTPTGFG GGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00215.1_g00013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447792.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A0D3BIG7	0.0	A0A0D3BIG7_BRAOL; Uncharacterized protein
STRING	Bo3g141780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]