PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00211.1_g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 492aa MW: 54585.5 Da PI: 8.9081 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32 | 2.6e-10 | 347 | 394 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A rs +RK +i eLe kv++L++e ++L +l l Rsa1.0_00211.1_g00040.1 347 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLL 394 899**************************************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-14 | 343 | 412 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.795 | 345 | 395 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.0E-9 | 347 | 394 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.85E-10 | 347 | 395 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-11 | 347 | 395 | No hit | No description |
CDD | cd14703 | 9.13E-23 | 348 | 395 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MGDTETDMIH RHHSSFGTSP SSIPKQKQKQ KQKLEINPNV IRSSESGKRV GVPPTSPYSQ 60 IHTSSSHSRS MSQPSSFFSL DSSLPPLSPS PFLRDHDLLL LSIHDDNKDS RPFSNNHNNP 120 SSLFPPSPFT TTTSETLPPR KSHRRSNSDI PTAFTSFPPR PTLERSVSGG ESSPFVKKED 180 REAMDDLFSA YMNLDNIDAF NSSDNLSRDD MESSRASGNK TNGGSDTEGE SSSVNYESGG 240 DHNHNHNHNN LKRRAADIAP PPPTTRHYRS VSVDSCFMDK LSFAQDSLKP PPSPMSRKVS 300 PTNSVDGGAA AAAFSMGEFK KGEFSAAEIK KIMANDKLAE MALSDPKRVK RILANRQSAA 360 RSKERKMRYI VELEHKVQTL QTEATTLSAQ LTLLQLIDPQ RDMMGLTNQN NELKFRLQAM 420 EQQARLRDAL NEALNGEVQR LKLAIGESES DRSKMQSLNA DMFQQLNISQ SRQQQPHHQN 480 GGTVSTKPES NE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00211.1_g00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478023.1 | 0.0 | PREDICTED: transcription factor RF2b | ||||
Refseq | XP_018478024.1 | 0.0 | PREDICTED: transcription factor RF2b | ||||
Refseq | XP_018478025.1 | 0.0 | PREDICTED: transcription factor RF2b | ||||
TrEMBL | V4MD77 | 0.0 | V4MD77_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411679.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4224 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-146 | bZIP family protein |