PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00211.1_g00025.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 537aa MW: 61065.9 Da PI: 4.4602

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00211.1_g00025.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	387	428	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++++ el++++++++Gg+ + + + ++ Rt+ q+k+++ Rsa1.0_00211.1_g00025.1 387 RAKWSKQDTELFYEGIQEFGGN-LSMVQQLFP-DRTRQQIKLKF 428 569***************99.*****.*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	3.4E-26	380	464	No hit	No description
SuperFamily	SSF46689	8.22E-9	382	436	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-6	384	429	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.28	385	436	IPR017884	SANT domain
SMART	SM00717	1.2E-7	386	434	IPR001005	SANT/Myb domain
CDD	cd00167	2.05E-5	389	429	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MDYLDLDDQP AAAAAPAARA GAKFKPKGRP QPKKKLLSLS TSQTTLSTLH LPKETLSTQT 60 QDPVSLDDVS TIVPDSEPIN QSTIETISKE NVFSEGLSVL RACSNVNSEG KKCDNATEAA 120 PAYPHDDDPR RQDSGHFVTQ ETDDTIHPQT QRMQTGEDEC HWNMETLNIV QEEGIITTSY 180 EQHTGKFQPK PRLPDAVIEE PESHCSVDYT TDANQYALTV NVESRNEFNS LGNTVVEEET 240 LTGRESKKGK SKRGRKQKTT SEEEPNKSLE KKKKFKHSGR RQRNRTLVEK ELLETPDDEI 300 KYLPIRDMLR LVEYREWMEK KEAKGAPVVP STQESNTNAL EDNHYYSQGF DAEDEFGMMV 360 ETENQENNVV KPDSPVNYQT YMNKTPRAKW SKQDTELFYE GIQEFGGNLS MVQQLFPDRT 420 RQQIKLKFKL EERRNPLKLN DALTTRSKHI THFHTVIKKL QQEAAAEREG EEEDGEEEEE 480 TTDVPENEEP AKSEETGDGV AGVKEPDLEY IENNGGDECE GEDDDDDEFW NSYKSEM

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MDYLDLDDQP AAAAAPAARA GAKFKPKGRP QPKKKLLSLS TSQTTLSTLH LPKETLSTQT  60
QDPVSLDDVS TIVPDSEPIN QSTIETISKE NVFSEGLSVL RACSNVNSEG KKCDNATEAA  120
PAYPHDDDPR RQDSGHFVTQ ETDDTIHPQT QRMQTGEDEC HWNMETLNIV QEEGIITTSY  180
EQHTGKFQPK PRLPDAVIEE PESHCSVDYT TDANQYALTV NVESRNEFNS LGNTVVEEET  240
LTGRESKKGK SKRGRKQKTT SEEEPNKSLE KKKKFKHSGR RQRNRTLVEK ELLETPDDEI  300
KYLPIRDMLR LVEYREWMEK KEAKGAPVVP STQESNTNAL EDNHYYSQGF DAEDEFGMMV  360
ETENQENNVV KPDSPVNYQT YMNKTPRAKW SKQDTELFYE GIQEFGGNLS MVQQLFPDRT  420
RQQIKLKFKL EERRNPLKLN DALTTRSKHI THFHTVIKKL QQEAAAEREG EEEDGEEEEE  480
TTDVPENEEP AKSEETGDGV AGVKEPDLEY IENNGGDECE GEDDDDDEFW NSYKSEM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00211.1_g00025.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484165.1	0.0	PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBL	A0A0D3DID7	0.0	A0A0D3DID7_BRAOL; Uncharacterized protein
STRING	Bo7g119350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5154	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-138	MYB_related family protein