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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00211.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 233aa MW: 26165.2 Da PI: 10.3167 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.2 | 1e-10 | 212 | 233 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++pr Rsa1.0_00211.1_g00012.1 212 LDDGYRWRKYGQKVVKNTQHPR 233 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-12 | 197 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-9 | 205 | 233 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.758 | 207 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-7 | 213 | 233 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGTINQGISL FDEPQNIINP NNTNHLGLFF SFPNQTLSSS SSSSSSSPSS LVSPFQSHHS 60 LDSFLHHNSS SFVIHPQDPI NLTANLPETL ISISSLSSPK QRDFHDGIVN LDHRRLTGGI 120 SSQRPSLDPW AWSSQARYGY SKKNNHVSET DDGVGEGGGI NNHQHHETPP RHKHTMKLLG 180 VVPTPKMKKL KTRRKVREPR FCFKTLSDVD VLDDGYRWRK YGQKVVKNTQ HPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00211.1_g00012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430035 | 0.0 | KF430035.1 Brassica rapa WRKY transcription factor 13 (WRKY13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478187.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 13 isoform X1 | ||||
Swissprot | Q9SVB7 | 4e-96 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0A7RE81 | 1e-127 | A0A0A7RE81_BRAOC; WRKY85 protein | ||||
STRING | Bo7g119200.1 | 1e-126 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6106 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-97 | WRKY DNA-binding protein 13 |