PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00206.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 2563aa MW: 285779 Da PI: 8.3173

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00206.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.6e-07	1233	1256	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++Cr + tG C G++C+F H+ Rsa1.0_00206.1_g00001.1 1233 RRPCRSYVLTGNCAAGPSCSFDHP 1256 68*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50104	9.62	1	152	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	1.3E-12	74	180	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	1.01E-8	75	154	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	6.25E-38	169	435	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	5.9E-17	195	441	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	2.8E-5	207	237	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	8.6E-20	209	224	No hit	No description
PRINTS	PR00364	8.6E-20	285	299	No hit	No description
PRINTS	PR00364	8.6E-20	376	390	No hit	No description
SuperFamily	SSF46785	7.89E-5	412	515	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:3.40.50.300	2.8E-5	463	512	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52058	4.93E-33	537	782	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.4E-27	541	780	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	3.0E-8	599	618	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	8.6E-20	688	704	No hit	No description
SuperFamily	SSF52058	9.98E-14	872	983	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	8.3E-14	875	974	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS50103	12.277	1230	1258	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0088	1231	1257	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-4	1233	1256	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.80.10.10	8.3E-14	1437	1444	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07928	1.5E-42	2300	2430	IPR012501	Vps54-likeVacuolar protein sorting-associated protein 54, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0042147	Biological Process	retrograde transport, endosome to Golgi
GO:0000139	Cellular Component	Golgi membrane
GO:0000938	Cellular Component	GARP complex
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2563 aa Download sequence Send to blast
MDRLLALRRQ GSPDFEPSLP PRFVDRIIID RMKKPSNRRG ISRGRLERWS SSFAEDLSPG 60 LRRDILHQLR LQRVAISMNF AHSRECLDGL LAIMDHLKAN DLVLVPVFLK VSVSDVRGQR 120 GSFGKAFTRL GNSVKASQVL KWKAAMIELT SITGYAYKKG DEVILAKNIV RDVCLPLSSQ 180 TNMKLRGTRL SLKSILSLLN RSQPSAPQIV GLWGMAGIGK TTITRGFFRT QAERYDVCYF 240 LPDFHLMCQT KGLSYLRDEF FSKVFGAEKV FIDACDTKLS FTRDRFLGKK VLIVLDGVSS 300 ARDAEVLVGG FGWFSGGHTI IFTSRNRQVL VQCNAREIYE IEKLSKHESL HLCSTVATKE 360 KWKGKMWLTS ELVNYASGNP LALRVLGLPI QKQSIEDVKQ QLRRLRQHPP IEIQNAFRIS 420 FSERDDDEKS IFLDLACFFR GESKDQVVNI LDGCGFSTDL GICGLIDESL ISLVDNKIEM 480 PNIFQDVGRF IICQEDKEAG KRSRLWDSSD IAGVLTHNTG TEAIEGIFLD ASSLTFDLSS 540 TAFERMYRLR LLKLHCLTSV NYCKVCLPEG LHSLPDELRL LHWERYPLGS LPRNFNPKNL 600 VELNMPYSNL TKVWKGTKNL VKLKRIILSH SQQLTKFPRL SKARNLEHID LEGCTSLVKV 660 NSSILHHQKL TFLNLKNCSR LRVMPTTTNL KSLEVLNLSG CSELENLQDL SSNLKELYLA 720 GTAIRGMPSS IGDLTRLVTL DLENCESLQH LPPGISNLKA MMTLKLSGCS NLKSLPVLDA 780 LFLQDSQRPN TRITMEESVS ISLHSAIQES RLDGSETLLN LDNFQLRSDI HGSCFSREPV 840 EEFLPSFEYP SNNGISQESW TRAATVIPFP SSILNSLASR LYALVSLFLC NAYLVDIPED 900 ICWLASLRRL DLGGNSFSQI PKSIKEFRKL HSLRLCHCKN LKSLPELPRS LVILNAHGCV 960 SLKSFPSSFE QFPRHYTFSN CFNLSPKVVR KYIGKALDSV KGMSKGRILE ASMEQEHEHL 1020 NAPAFSICIP ASAGHQSSVN LQAGSSVRIQ LAPGMLNTLS GFVLSIVVEF GDNYSNTSGF 1080 AIKCICRKTT TDLSPRLERI FQCWAPREPT TVRRDHMFVF GSLKMHHAEA INHDFLSDSV 1140 TFEFHPVNSE NQLLGDSCTV KRCGVCLITD ATSNTTLSAK RPSSSMDHSG GLSGMEQVAP 1200 PYKRCRLKRV IEIVILSLRK RKREMSVPTS MVRRPCRSYV LTGNCAAGPS CSFDHPTWLL 1260 THKTASSIPS ESPRRDILGL SSYGKPSDKR VETSTEKRKR LSVSESRQAT AGTEQEEDGL 1320 KRKETRTQCL WRQTVISFIL QVHLGPVSAR FEHDLGPILS SRMREKSWAL TRFRRLDFLR 1380 RMEQKSLEIA MDPNHYARAY MNPHCSTSPP SPPIEPSHLS LNPEGFLSPP QTLPRVLTSL 1440 QIQNLTILVT KENYNLDSIR FTLFEIQLFP RSHFVSVHDI DSVRDLMDSH PSLVGRSIGN 1500 SNRSSVDLGR STPSSPSPSS LTKSISDASS QSLSSILNNP HGGKSGVYGT DASWVGWWSS 1560 STSVAPSEFA PVASAKLPGS DLARSDFHGY VSSISDSHAR FEDIINHARE ESSGLDQESH 1620 VSGLASCLRE VPSLYFKEDF ALEDGATFRS ACPFSSLTEN LALQEKLSQY LDVVEMHLVK 1680 EISVRSDSFF EAQGQLQDLN GKIVEGCSRI RELKETIRLL DRNLVDSARQ IQELSSTRIN 1740 MLELQRKLRV ILYVNQALSA LKLLVASADC AGALDITDDL QNLFAGDELT GLHCFRHLRD 1800 HVTTSIESIN SYGLFIANSI SAICKGHCFL LILTAEFMRI SIHNTGEIDV LILSAAKKRG 1860 SISSNGQTGD EVKLEEEDTS TLCDRLLPLV IGLLRTAKFP SILRMYREAL TSEMKNAIKN 1920 AVAELLPVLV ARSLESDFSH GERSVDVDES ILIRSAFTGG GLSLASKLRA LSSEAFVNLL 1980 TAIYRIVQAH LVRASEVKKA IEWILCNIDG HYAADSVAAA IAVGAVAAES IQEAGFQGEP 2040 SVSSPLGKAT SKASQLQRKS SDTSSLINMS RNFRADVLRE NTEAVFAACE VTHARWAKLL 2100 GVRALLHPKL KLQEFMSIYD LTQEFITATE KIGGRLGSSI RGTLQSQAKA FVDSQHEARR 2160 SVELYLLHPV DMTKLKAVLD QETWDEIDVP EEFQSIISSL FASQQLISRK ADDADTITYH 2220 RNPLTPNGSL TSGTEDQSTE LRNENSESSE GPAVSSAQVK STVSPESLER SKAGVSSVAN 2280 NQSNQKAHGK SNLFYQGVGY HMVNCGLILL KMLSEYIDMS NSLPALSSEV VLRVVEVLRF 2340 FNTRTCQLVL GAGAMQVSGL KSIKAKHLAL ASQVIDFTYT IIPESRRILF SKVPETRKPL 2400 LSVEIDRVAQ DYRVHRDEIY AKLVQIMRER LLAHLHGLPK VVESWNRPPD SNKQTKEFAW 2460 PLTREVGYLH RVLSETLHEA DVKAIFRQVI SIIHTQTSQT LSNLEISSPE AKKRLKLHVE 2520 LILKCIRSLP SDNANESGIP NWGQLDEFFA QHFKEEEEGG EAE

Sequence ? help Back to Top

Protein Sequence Length: 2563 aa Download sequence Send to blast

MDRLLALRRQ GSPDFEPSLP PRFVDRIIID RMKKPSNRRG ISRGRLERWS SSFAEDLSPG  60
LRRDILHQLR LQRVAISMNF AHSRECLDGL LAIMDHLKAN DLVLVPVFLK VSVSDVRGQR  120
GSFGKAFTRL GNSVKASQVL KWKAAMIELT SITGYAYKKG DEVILAKNIV RDVCLPLSSQ  180
TNMKLRGTRL SLKSILSLLN RSQPSAPQIV GLWGMAGIGK TTITRGFFRT QAERYDVCYF  240
LPDFHLMCQT KGLSYLRDEF FSKVFGAEKV FIDACDTKLS FTRDRFLGKK VLIVLDGVSS  300
ARDAEVLVGG FGWFSGGHTI IFTSRNRQVL VQCNAREIYE IEKLSKHESL HLCSTVATKE  360
KWKGKMWLTS ELVNYASGNP LALRVLGLPI QKQSIEDVKQ QLRRLRQHPP IEIQNAFRIS  420
FSERDDDEKS IFLDLACFFR GESKDQVVNI LDGCGFSTDL GICGLIDESL ISLVDNKIEM  480
PNIFQDVGRF IICQEDKEAG KRSRLWDSSD IAGVLTHNTG TEAIEGIFLD ASSLTFDLSS  540
TAFERMYRLR LLKLHCLTSV NYCKVCLPEG LHSLPDELRL LHWERYPLGS LPRNFNPKNL  600
VELNMPYSNL TKVWKGTKNL VKLKRIILSH SQQLTKFPRL SKARNLEHID LEGCTSLVKV  660
NSSILHHQKL TFLNLKNCSR LRVMPTTTNL KSLEVLNLSG CSELENLQDL SSNLKELYLA  720
GTAIRGMPSS IGDLTRLVTL DLENCESLQH LPPGISNLKA MMTLKLSGCS NLKSLPVLDA  780
LFLQDSQRPN TRITMEESVS ISLHSAIQES RLDGSETLLN LDNFQLRSDI HGSCFSREPV  840
EEFLPSFEYP SNNGISQESW TRAATVIPFP SSILNSLASR LYALVSLFLC NAYLVDIPED  900
ICWLASLRRL DLGGNSFSQI PKSIKEFRKL HSLRLCHCKN LKSLPELPRS LVILNAHGCV  960
SLKSFPSSFE QFPRHYTFSN CFNLSPKVVR KYIGKALDSV KGMSKGRILE ASMEQEHEHL  1020
NAPAFSICIP ASAGHQSSVN LQAGSSVRIQ LAPGMLNTLS GFVLSIVVEF GDNYSNTSGF  1080
AIKCICRKTT TDLSPRLERI FQCWAPREPT TVRRDHMFVF GSLKMHHAEA INHDFLSDSV  1140
TFEFHPVNSE NQLLGDSCTV KRCGVCLITD ATSNTTLSAK RPSSSMDHSG GLSGMEQVAP  1200
PYKRCRLKRV IEIVILSLRK RKREMSVPTS MVRRPCRSYV LTGNCAAGPS CSFDHPTWLL  1260
THKTASSIPS ESPRRDILGL SSYGKPSDKR VETSTEKRKR LSVSESRQAT AGTEQEEDGL  1320
KRKETRTQCL WRQTVISFIL QVHLGPVSAR FEHDLGPILS SRMREKSWAL TRFRRLDFLR  1380
RMEQKSLEIA MDPNHYARAY MNPHCSTSPP SPPIEPSHLS LNPEGFLSPP QTLPRVLTSL  1440
QIQNLTILVT KENYNLDSIR FTLFEIQLFP RSHFVSVHDI DSVRDLMDSH PSLVGRSIGN  1500
SNRSSVDLGR STPSSPSPSS LTKSISDASS QSLSSILNNP HGGKSGVYGT DASWVGWWSS  1560
STSVAPSEFA PVASAKLPGS DLARSDFHGY VSSISDSHAR FEDIINHARE ESSGLDQESH  1620
VSGLASCLRE VPSLYFKEDF ALEDGATFRS ACPFSSLTEN LALQEKLSQY LDVVEMHLVK  1680
EISVRSDSFF EAQGQLQDLN GKIVEGCSRI RELKETIRLL DRNLVDSARQ IQELSSTRIN  1740
MLELQRKLRV ILYVNQALSA LKLLVASADC AGALDITDDL QNLFAGDELT GLHCFRHLRD  1800
HVTTSIESIN SYGLFIANSI SAICKGHCFL LILTAEFMRI SIHNTGEIDV LILSAAKKRG  1860
SISSNGQTGD EVKLEEEDTS TLCDRLLPLV IGLLRTAKFP SILRMYREAL TSEMKNAIKN  1920
AVAELLPVLV ARSLESDFSH GERSVDVDES ILIRSAFTGG GLSLASKLRA LSSEAFVNLL  1980
TAIYRIVQAH LVRASEVKKA IEWILCNIDG HYAADSVAAA IAVGAVAAES IQEAGFQGEP  2040
SVSSPLGKAT SKASQLQRKS SDTSSLINMS RNFRADVLRE NTEAVFAACE VTHARWAKLL  2100
GVRALLHPKL KLQEFMSIYD LTQEFITATE KIGGRLGSSI RGTLQSQAKA FVDSQHEARR  2160
SVELYLLHPV DMTKLKAVLD QETWDEIDVP EEFQSIISSL FASQQLISRK ADDADTITYH  2220
RNPLTPNGSL TSGTEDQSTE LRNENSESSE GPAVSSAQVK STVSPESLER SKAGVSSVAN  2280
NQSNQKAHGK SNLFYQGVGY HMVNCGLILL KMLSEYIDMS NSLPALSSEV VLRVVEVLRF  2340
FNTRTCQLVL GAGAMQVSGL KSIKAKHLAL ASQVIDFTYT IIPESRRILF SKVPETRKPL  2400
LSVEIDRVAQ DYRVHRDEIY AKLVQIMRER LLAHLHGLPK VVESWNRPPD SNKQTKEFAW  2460
PLTREVGYLH RVLSETLHEA DVKAIFRQVI SIIHTQTSQT LSNLEISSPE AKKRLKLHVE  2520
LILKCIRSLP SDNANESGIP NWGQLDEFFA QHFKEEEEGG EAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1158	1162	TVKRC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00206.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY093762	0.0	AY093762.1 Arabidopsis thaliana AT4g19490/F24J7_50 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132855.1	0.0	PREDICTED: disease resistance protein RRS1 isoform X2
TrEMBL	M4DA90	0.0	M4DA90_BRARP; Uncharacterized protein
STRING	Bra013400.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9197	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45260.1	1e-161	Disease resistance protein (TIR-NBS-LRR class)