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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00205.1_g00042.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 280aa MW: 32270.2 Da PI: 5.4162 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00205.1_g00042.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 25.7 | 3.2e-08 | 18 | 143 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikev..diykvePwdLpk.kvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
d+ ++ +L++k+eg+ + + i e+ ++y+ ePw Lp+ ++++ + +ew + k ++++ + + ++g W g+
Rsa1.0_00205.1_g00042.1 18 DSGIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPHpQTAHpilNPREWLYLGKPHRNNF---PVEGVDHEGCWVRIGSAV 100
88899************9998889998778*********95322224456779988888777553...45667789********99 PP
NAM 91 evlsk.kgelvglkktLvfy...kgrapkg.ektdWvmheyrl 128
+ s+ ++e +g + + kg+++ + + ++W+m+eyrl
Rsa1.0_00205.1_g00042.1 101 LIRSEeTDEIIGGTSRFRYRfrnKGDEHAPlRWSNWFMKEYRL 143
999985566688888888876664433333168********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MTTTRMAGFG EEESGISDSG IIEGFLRPKI EGEAVAIPGL IVELGEELYT REPWLLPHPQ 60 TAHPILNPRE WLYLGKPHRN NFPVEGVDHE GCWVRIGSAV LIRSEETDEI IGGTSRFRYR 120 FRNKGDEHAP LRWSNWFMKE YRLFNPTPHM FRVKDPKASL DFYTFYDTST DPTERTVWTF 180 GRPATIELTH NWDTESDPEF KGGNSEPREF GKVSTLLFST FTSNWSRLSG HIVYHQYEPV 240 DDVHKACERF EQLGVELAGK MKNIALIKDP DGYWIESSLK
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2za0_A | 2e-25 | 150 | 276 | 36 | 173 | Glyoxalase I |
2za0_B | 2e-25 | 150 | 276 | 36 | 173 | Glyoxalase I |
4kyh_A | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4kyh_B | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4kyk_A | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4kyk_B | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4opn_A | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4opn_B | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4x2a_A | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
4x2a_B | 2e-25 | 150 | 276 | 36 | 173 | Lactoylglutathione lyase |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KT720496 | 9e-31 | KT720496.1 Brassica napus cultivar 2682 glyoxalase I (GLYI) mRNA, complete cds. |