PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00204.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 457aa    MW: 51072 Da    PI: 8.875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00204.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075399421123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++F++   L  H r+H
  Rsa1.0_00204.1_g00024.1 399 HECPICFRVFKSGQALGGHKRSH 421
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-6636No hitNo description
PROSITE profilePS5015710.3671037IPR007087Zinc finger, C2H2
SMARTSM003550.551032IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-41034IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM003550.01591113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15791118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-492115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.1E-492113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM003550.14399421IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974399421IPR007087Zinc finger, C2H2
PfamPF139123.9E-10399421IPR007087Zinc finger, C2H2
PROSITE patternPS000280401421IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEEQFKERKF VCKFCSRRFA CGKSLGGHIR THMSKDNSAD SDDDEHNKLR IDENGGQASY  60
GLRENPKKNK KFVVQRDMMM AHQHQHQQQL LRCRECGKGF ASSKALCGHM ACHTEREKTV  120
MDSQSDTEAS SSPIRRRSKR AVKHHHHNHH KADDAFVDGG SIMDQSDSVA SSDASEIETE  180
QEETALSLMM LSRDSSFKKG GHNLVFVNSR AESSDNNSVI LETKSSSGEQ LKILNVKNVE  240
EFCKKEKLGG VDNGDVLYDS DNSDSGYFRN GPKKLDSDVT VDGFLKNTGF NNKAAMGFNS  300
YTAKQDKSLN IFRKEWSVSG SGSGSGRSST KYDLRKSKRG FPCYGRKKMK YEFTESVYDS  360
GDQLSLETDS CADTIKIHSK SSTVVKKASG VAKKKNKGHE CPICFRVFKS GQALGGHKRS  420
HFIGSQDHRT LVIQQHHQVA HDMHTLIDLN LPAPIDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00204.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485678.10.0PREDICTED: uncharacterized protein LOC108856391
RefseqXP_018485686.10.0PREDICTED: uncharacterized protein LOC108856391
TrEMBLA0A3P5Y3B30.0A0A3P5Y3B3_BRACM; Uncharacterized protein
STRINGBo5g042720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein