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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00201.1_g00041.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
B3 |
Protein Properties |
Length: 359aa MW: 40921.5 Da PI: 7.6848 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00201.1_g00041.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74 | 1.8e-23 | 77 | 178 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79
f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD
Rsa1.0_00201.1_g00041.1 77 FVKILTASDTSTHGGFSVLRKHATEClpsldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDA 160
89****************************9543..445569******************************************** PP
EEEEE-SSSEE..EEEEE- CS
B3 80 vvFkldgrsefelvvkvfr 98
+vF + + +++ l+v+v+r
Rsa1.0_00201.1_g00041.1 161 FVFLRGH-QNGDLRVGVRR 178
****644.88889***998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MANVKNDQLY MELWKACAGP LVEVPRYGER VFYFPQAENE TDEVYAQITL RPEENQSEPT 60 SIDPPPTEPA KQTVDSFVKI LTASDTSTHG GFSVLRKHAT ECLPSLDMTQ ATPTQELVAR 120 DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGHQNG DLRVGVRRLA 180 KQQSTMPASV ISSQSMHLGV LATASHAFNR CFKIHQVKET RTKRRLHPQV AVDPNSWKDQ 240 KQHTSSTRSR TKVQMQGTAV GRAVDLTLLR SYDELISELE KMFEIEGELR TKDKWTIVFT 300 DDEGDMMLVG DDPWNEFCKM AKKLFIYPSD EVKKMSSKSL SDDEITIINL ESDQRAVKL
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 2e-96 | 2 | 257 | 12 | 300 | Auxin response factor 1 |
4ldw_A | 2e-96 | 2 | 257 | 12 | 300 | Auxin response factor 1 |
4ldw_B | 2e-96 | 2 | 257 | 12 | 300 | Auxin response factor 1 |
4ldx_A | 2e-96 | 2 | 257 | 12 | 300 | Auxin response factor 1 |
4ldx_B | 2e-96 | 2 | 257 | 12 | 300 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN979476 | 0.0 | JN979476.1 Brassica rapa subsp. pekinensis auxin response factor 11 (ARF11) mRNA, complete cds. |