PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 301aa MW: 33146.1 Da PI: 5.531

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00201.1_g00021.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56	1e-17	108	157	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps+ +r+++g+f taeeAa +++a+ +++g Rsa1.0_00201.1_g00021.1 108 KYRGVRQRP-WGKYAAEIRDPSK---GARIWIGTFNTAEEAAIGYDKAAIRIKG 157 8******.******965...4*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.23E-19	108	164	IPR016177	DNA-binding domain
CDD	cd00018	7.04E-29	108	163	No hit	No description
Gene3D	G3DSA:3.30.730.10	8.3E-27	108	163	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.85	108	165	IPR001471	AP2/ERF domain
Pfam	PF00847	6.3E-11	108	157	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-32	108	171	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.5E-10	109	120	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.5E-10	131	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MKSRERNVKY TVHRKLTSLT DQPFNGCPKV VKITVTDPCA TDSSSDEEEN DRVVSRAAAT 60 RKRVKRYVDV IRFCDNKQGG AAAAKRKKPA AAENGGGGDD HGSVKPVKYR GVRQRPWGKY 120 AAEIRDPSKG ARIWIGTFNT AEEAAIGYDK AAIRIKGCNA LTNILTPPPP STPPTAIDLE 180 TVSPARESSQ YSMRSPTSVL RFSRDEETTE LRTVSASPVV VVEEETPAGF SLPDPFFLPP 240 ELFPARDSFW DSEITPDPLF LDETVSTRDS NLSDGFPLGV IGDLSSCSWD VDEFFKDHLF 300 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-22	104	164	1	62	ATERF1
3gcc_A	2e-22	104	164	1	62	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00201.1_g00021.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438034.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF5-like
Refseq	XP_018438223.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF5-like
Swissprot	O82339	1e-102	CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBL	A0A078HU65	1e-131	A0A078HU65_BRANA; BnaC04g01080D protein
TrEMBL	A0A0D3BNV1	1e-131	A0A0D3BNV1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6C3E4	1e-131	A0A3P6C3E4_BRAOL; Uncharacterized protein
STRING	Bo4g009400.1	1e-132	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2578	25	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46310.1	3e-91	cytokinin response factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Striberny B, et al. Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain. Plant Signal Behav, 2017. 12(2): p. e1276684 [PMID:28045578]