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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00198.1_g00042.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 219aa MW: 25136.1 Da PI: 9.1987 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00198.1_g00042.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.7 | 7.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRr+g++KKA+ELSvLCda+va i+fs++gkly+++s
Rsa1.0_00198.1_g00042.1 9 KRIENLTSRQVTFSKRRKGLFKKAHELSVLCDAQVAAIVFSKNGKLYDFAS 59
79***********************************************86 PP
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2 | K-box | 55 | 3.6e-19 | 83 | 176 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk...kekelqeen 91
++++ ++l++e+ + ++ie Lq R+l+G+dL+s+s++eL+++ +++eksl+++Rs+K +l +ie+l+ keke+ +e
Rsa1.0_00198.1_g00042.1 83 QKQQYVQELKNEMVIMMDKIELLQLHSRKLMGQDLDSCSVEELNEISTKIEKSLTNVRSRKAKLNEYKIEKLKAeiaKEKEVFNEG 168
6778889*****************999********************************************995444999999999 PP
K-box 92 kaLrkkle 99
Lr+++e
Rsa1.0_00198.1_g00042.1 169 SGLRQMFE 176
99999887 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MVRGKIEIKR IENLTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIVFSK NGKLYDFASS 60 NMQKMIERCE IQRNEYTGAE NLQKQQYVQE LKNEMVIMMD KIELLQLHSR KLMGQDLDSC 120 SVEELNEIST KIEKSLTNVR SRKAKLNEYK IEKLKAEIAK EKEVFNEGSG LRQMFEAQSL 180 WMQSRSMKSE KSAPSCGCGN MNIADVETDL SIGLPENRV
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC232542 | 3e-45 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |