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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00195.1_g00031.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 296aa MW: 33660.7 Da PI: 6.3666 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00195.1_g00031.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 180.4 | 4.4e-56 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+t
Rsa1.0_00195.1_g00031.1 5 LPPGFRFHPTDEELITHYLCRKVSDNGFTG-KAVVDVDLNKCEPWDLPDKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTT 89
79*************************999.88***************988999******************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
gkdke+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle
Rsa1.0_00195.1_g00031.1 90 GKDKEIYR-SGMLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
********.999*****************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MEENLPPGFR FHPTDEELIT HYLCRKVSDN GFTGKAVVDV DLNKCEPWDL PDKASMGEKE 60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGM LVGMKKTLVF YKGRAPKGEK 120
SNWVMHEYRL ETKQPFTPAK EEWVVCRVFQ KSTATKKPQE QQPQSSFGSP CDAISSMANE 180
FEDIELPNLN SNSSTVDYNH IHQQLYSQNN VYSDNTTSTA GLNMNMANNL PAWTTSLLGP 240
PLSPINSLLL KAFQIRNSYN INPSLLQQGV SNVMQDGSSS SQPQPQEEAF NMDSLW
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB026658 | 3e-77 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. |
| GenBank | CP002686 | 3e-77 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
