PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00193.1_g00029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 285aa    MW: 31058.9 Da    PI: 8.5041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00193.1_g00029.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056114136123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ Cgk F++   L  H  +H
  Rsa1.0_00193.1_g00029.1 114 HECSVCGKAFPSYQALGGHKASH 136
                              78**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-8114136No hitNo description
PfamPF139129.1E-14114137IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99114141IPR007087Zinc finger, C2H2
SMARTSM003550.022114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-8172199No hitNo description
PROSITE profilePS501578.912177199IPR007087Zinc finger, C2H2
PfamPF139121.9E-13177201IPR007087Zinc finger, C2H2
SMARTSM003550.28177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALEAMNCPT NMSSFTARKD RIEPTDDLMT NDAVFLEPWL KRKRSKRQRS RSPSSPSSSS  60
SSPPPRSRPK SQIQDLAEEE YLALCLLMLA NDHHQPTKTT RPPPPQESTT KLSHECSVCG  120
KAFPSYQALG GHKASHRIKP PTTAAADDNS TSPTIPVSVA GEKHPTSTTI APSGKIHECS  180
ICHRVFPTGQ ALGGHKRCHY EGTIGGGGTK SVSQSGSVTS TVSEERNNRV QFIDLNLPAL  240
PELSLSHHNT VVDEEIQSPL TGKKPLLSLT DHDQVIKKED FSLRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13946LKRKRSKR
24550KRQRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00193.1_g00029.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486592.11e-176PREDICTED: zinc finger protein AZF2-like
SwissprotQ9SSW21e-103AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A0D3CID61e-132A0A0D3CID6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8431e-132A0A3P6F843_BRAOL; Uncharacterized protein
STRINGBo5g113850.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.29e-71zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]