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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00192.1_g00021.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
ERF |
Protein Properties |
Length: 255aa MW: 28633 Da PI: 6.7293 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00192.1_g00021.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.5 | 9e-20 | 87 | 136 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g
Rsa1.0_00192.1_g00021.1 87 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 136
69*******.**********93....36************************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MNNGKRPFRA GESEEKKEGD DDENIFPFFS ARSEYDTRAM VSALTQVIGN QSSTHDNNLH 60 HPVEYSQQDP IQHVPPTQDQ GKLRKIHYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFETA 120 EAAALAYDEA ALKFKGSKAK LNFPERAQLA SNTSTITGPP NYYSSNNQTY YSNPQTNPET 180 IPYYNHYYYN QYLQQGGNSN DVLGYSLAGG ETGGSIYSHQ TLSNTTSSSS GGSSRQQEDY 240 TRFWHFGDSS PNSGF
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Functional Description ? help
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Source |
Description |
UniProt | Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhang Y, et al.
Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development. Nucleic Acids Res., 2016. 44(3): p. 1271-84 [PMID:26721386] - Zhang Y, et al.
TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance. Plant Physiol., 2016. 171(1): p. 483-93 [PMID:26969721] - Heyman J, et al.
The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356] - Kong X, et al.
PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]
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