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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00190.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 20129.7 Da PI: 7.2532 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.7e-05 | 19 | 41 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+ Fs++ +L +H +t H Rsa1.0_00190.1_g00007.1 19 ECSLCNHIFSTPQDLISHTNTfH 41 5*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 20 | 41 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MMNGFGMKRD LMQVTDPREC SLCNHIFSTP QDLISHTNTF HPSHHFSSFS PSAAAAPTTF 60 RHYTNLNRNP NPVFQAGNRF DLNYYRRGYT DEQERLHGGF PAITPANRAN FPFGQQEKRP 120 KLMNLFPAMP SEDLRTLPLI CQLEQRIPHD TAMERDETIS DSIDLTLRLS LFDTK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00190.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118648.1 | 6e-68 | PREDICTED: uncharacterized protein LOC103843651 | ||||
TrEMBL | A0A3P5YAY3 | 4e-66 | A0A3P5YAY3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EUM8 | 3e-66 | M4EUM8_BRARP; Uncharacterized protein | ||||
STRING | Bra032510.1-P | 5e-67 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13551 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04445.1 | 4e-33 | C2H2-like zinc finger protein |