PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00185.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 534aa    MW: 58700.8 Da    PI: 6.294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00185.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.6e-062713091154
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  Rsa1.0_00185.1_g00011.1 271 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 309
                              5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-6270313No hitNo description
SMARTSM003530.0071270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-8270318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-11270327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MADEFQATSA ICGSGGGAWW NSPRSVMSPS DNFLSPCFRA AITSDEFGCQ ENNIKSRNTC  60
TDNNIIFGQP EADTDSGGST VTIDSTMQIM GLGFASNSSS DWKHTILQED LNSSLLRSSQ  120
DHGPGFLSTT TSPYLLNPAC SSSSSISYSS SLLRTFYDPE PNPYSFVSTT SCSINDPRVS  180
WANNNTTNPH HQAAYGLINN FSNNINSRPL SKTTQNSFAT TPQIISTRVE DKAKNQKTRG  240
QSESLKRAKY NEPASKKQRV STPSPLPTFK VRKENLRDQI TSLQQLVSPF GKTDTASVLQ  300
EAIEYIKFLH DQVTVLSTPY MKQGAPIHQQ QQDGNENQEL RAHGLCLVPI SSTFPVANET  360
TADFWTPTFG GNNFSLSGAP RIVQRATAIV GWTNPDRLGL GPAIASIETP DEEHSRKAEQ  420
RRSPQRSPQH RLSFQTPEAA RPCSTGEASK ESLIQTPENK TIDLPSNRSC LLSCSQSPTR  480
HHSGEAGYSR LIWFTGSSRY PDEKLELISK DEVCESGLNK YEIWTEGEIW GGDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426RRSPQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00185.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806491e-117AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY0856021e-117AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence.
GenBankAY1130721e-117AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433346.10.0PREDICTED: transcription factor bHLH112 isoform X1
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A1J3CDX30.0A0A1J3CDX3_NOCCA; Uncharacterized protein
STRINGBo1g098400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]