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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00180.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 28976.3 Da PI: 4.3278 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.2e-05 | 238 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C+++F++ + L++H + H Rsa1.0_00180.1_g00022.1 238 FGCSSCNRTFNSEMGLQSHTKAkH 261 56*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.783 | 238 | 265 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 240 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEFWGVEVKG GEPLRVDPGK DMIVHISLAA LGEKKNGGNE PVRLYTKVED QKLLIGTLSH 60 DKFPQLCTEI VLPRSFELSH SWKDGSSDDE ELAEPDVAKS GVKQVNFQLP KAEEDDDEDE 120 DDSDDEDADS EDEEEEKKVT VEADEDDDED SSDDEEDDSS DEETPEKKAE EAKKRPAEAN 180 TSKTASNKKA KFVTPQKSES KKPHVHVATP HPSKGVKSSG SNGETSKQQQ TPKSAGAFGC 240 SSCNRTFNSE MGLQSHTKAK HSAAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Involved in the modulation of abscisic acid and stress-responsive genes. {ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:16553900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00180.1_g00022.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid. {ECO:0000269|PubMed:16553900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442494.1 | 1e-140 | PREDICTED: histone deacetylase HDT3 | ||||
Swissprot | Q9LZR5 | 3e-91 | HDT3_ARATH; Histone deacetylase HDT3 | ||||
TrEMBL | A0A397XYU1 | 1e-125 | A0A397XYU1_BRACM; Uncharacterized protein | ||||
STRING | Bo9g181760.1 | 1e-119 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 2e-40 | histone deacetylase 2C |