PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00179.1_g00044.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 641aa    MW: 73625.4 Da    PI: 9.9023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00179.1_g00044.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-09470512140
                              TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                              +++W++eE ++l +++ ++++g   +W+ I+ ++g+gRt +++
  Rsa1.0_00179.1_g00044.1 470 KQPWSKEEIDKLRKGIIKYPKGisrRWEVISDYIGTGRTVEEI 512
                              79*************************************9886 PP
2Myb_DNA-binding22.52.7e-07584627445
                              S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                              W+   +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
  Rsa1.0_00179.1_g00044.1 584 WSVVQERALVQALKTFPKDssqRWERVAAAVP-GKTMIQCKKKFA 627
                              9999****************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.15E-2199191IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1107.9E-22105211IPR001623DnaJ domain
SMARTSM002711.9E-17112187IPR001623DnaJ domain
CDDcd062571.90E-13113184IPR001623DnaJ domain
PfamPF002262.6E-17113192IPR001623DnaJ domain
PROSITE profilePS5007618.06113195IPR001623DnaJ domain
PRINTSPR006254.8E-9118136IPR001623DnaJ domain
PRINTSPR006254.8E-9136151IPR001623DnaJ domain
PRINTSPR006254.8E-9167187IPR001623DnaJ domain
PROSITE patternPS006360172191IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.609.9E-7463513IPR009057Homeodomain-like
SuperFamilySSF466892.02E-7467513IPR009057Homeodomain-like
PROSITE profilePS512936.823468523IPR017884SANT domain
SMARTSM007173.1E-6469522IPR001005SANT/Myb domain
PfamPF002491.9E-7470512IPR001005SANT/Myb domain
CDDcd001672.97E-5472512No hitNo description
PROSITE profilePS512939.087579634IPR017884SANT domain
SMARTSM007172.5E-7580632IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-8582629IPR009057Homeodomain-like
CDDcd001671.55E-5584630No hitNo description
Gene3DG3DSA:1.10.10.603.8E-4584628IPR009057Homeodomain-like
PfamPF002491.2E-5584628IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MPIGRSNPPV KLITYSNELV DGKPFYAFSN SLPAKSLNRE PAGHAFHSAA RKLHGCAEAR  60
SDGGKRSEKK VGDDDEEEEY VPSFNPYGNK GKNKNKKKKP GTQQQQQHQQ KQDPYALLGL  120
RNLRYLATQD QIKKSYREAA LKHHPDKLAA LVIAEETQEG KEAKKEEIES RFRAIQEAYE  180
VLMDPTKRRI FDSTDEFDVV DVEELTPREF FKVFGPAFKG VARWSAGQRV PDLGDEKTSL  240
KEVDKFYRFW NGFKSSRAFP DYEERRHDLE KADSRQEKRR MEREKAKKTA KARQEDDVRI  300
RNLVENAYRM DPRILKRKEE EEGKKQKKKE AKLMAKKKQE EEAAAEAEKR RKEEAEERKK  360
EKEVFLKERS RLRTRAAHVL AQRLVSKEDV VNLCMSLSIE QLQSLCATKV INDHEANSKE  420
KEVEKVNSKE TEVEKVNSKE KECEKVNSEE KECEKVNAEP SKLDNTQKKK QPWSKEEIDK  480
LRKGIIKYPK GISRRWEVIS DYIGTGRTVE EILKATKTVL LQKPDSAKAF DTFLEKRKPT  540
VSIASPLSTR EEELGETFKE TVVGKSSDNN DGEASGRSSE ADGWSVVQER ALVQALKTFP  600
KDSSQRWERV AAAVPGKTMI QCKKKFAELK ELIRSKKTGG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-1220631417123Zuotin
5dje_B6e-1220631417123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335351KKKQEEEAAAEAEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00179.1_g00044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490217.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A0D3BAQ60.0A0A0D3BAQ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B5U70.0A0A3P6B5U7_BRAOL; Uncharacterized protein
STRINGBo3g064180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-110DnaJ domain ;Myb-like DNA-binding domain