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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00176.1_g00016.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 224aa MW: 25906.1 Da PI: 7.494 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00176.1_g00016.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.6 | 5.7e-20 | 67 | 120 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++t+eq + Le Fe+++++ ++e++A++lgL+ rqV vWFqNrRa++k+
Rsa1.0_00176.1_g00016.1 67 KRKLTDEQMNMLEYSFENEHKLESGRKEKIARELGLDPRQVAVWFQNRRARWKN 120
4589************************************************95 PP
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2 | HD-ZIP_I/II | 121.3 | 4.9e-39 | 66 | 157 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kr+l++eq+++LE sFe+e+kLe+ rK+++areLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++yd++ +++Le++v +L
Rsa1.0_00176.1_g00016.1 66 RKRKLTDEQMNMLEYSFENEHKLESGRKEKIARELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQYDTILLGQCHLESQVLKL 151
8************************************************************************************* PP
HD-ZIP_I/II 88 reelke 93
+e+l+e
Rsa1.0_00176.1_g00016.1 152 TEQLSE 157
***986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009733 | Biological Process | response to auxin |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MDQAVLGSQA YLYATQTHNQ CIIVNQIDGA PSGDGSKPVK RRRKRRSKGS SATNGEDVAA 60 IGRMLRKRKL TDEQMNMLEY SFENEHKLES GRKEKIAREL GLDPRQVAVW FQNRRARWKN 120 KKLEEEYAKL KSQYDTILLG QCHLESQVLK LTEQLSEAQS EIRKLSERLV QETSTNSSSS 180 SLSVEANYTP IEFEFGPDTN YNIPFYMMDN DYLQNMEYWD GLYV
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 39 | 45 | KRRRKRR |
2 | 64 | 69 | LRKRKL |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189225 | 0.0 | AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence. |