PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00176.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 276aa    MW: 31287.7 Da    PI: 6.3626
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00176.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.92.7e-3251041100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +C  C+++r++C ++C++apyfpa++ +kfa+++k+FG + ++k+l++l+ ++re+a+++lvyeA+ar++d v+G+v++i +l+++
  Rsa1.0_00176.1_g00012.1   5 KCGRCRLMRKNCHENCIFAPYFPANDLNKFACLQKIFGSASITKILTDLDVDQRETAVTTLVYEAKARIDDAVQGCVRTIYELTHE 90 
                              5************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                               + lk+e a+lke+
  Rsa1.0_00176.1_g00012.1  91 NQLLKQENAELKEQ 104
                              ******99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7334105IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-315102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAQNKCGRCR LMRKNCHENC IFAPYFPAND LNKFACLQKI FGSASITKIL TDLDVDQRET  60
AVTTLVYEAK ARIDDAVQGC VRTIYELTHE NQLLKQENAE LKEQRALMQQ PLGLVQQTQN  120
PTAFLQPAQV QRGGTSSQSQ QHLETQTQWG SQPHQTGISF ATQPQQHNQT MMQWPVESQP  180
QQHLETQTQW GSQPHQTGIS FATQPQQHNQ TQMQWPVESQ PQQNLHYTEP QHHSSMTTTN  240
CSATGNELMH LTTQASGPLP PQSQMQENRT SDEDLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-242978103LOB family transfactor Ramosa2.1
5ly0_B9e-242978103LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00176.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456838.10.0PREDICTED: LOB domain-containing protein 28-like
RefseqXP_018456839.10.0PREDICTED: LOB domain-containing protein 28-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3771822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-28LBD family protein