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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00174.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HSF |
Protein Properties |
Length: 333aa MW: 37926.7 Da PI: 9.4084 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00174.1_g00005.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.2 | 8.4e-36 | 35 | 127 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk
Rsa1.0_00174.1_g00005.1 35 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFK 111
9*****************************************************************99.........********* PP
XXXXXXXXXXXXXXXX CS
HSF_DNA-bind 88 kgkkellekikrkkse 103
+g+k+ll++i+r+k++
Rsa1.0_00174.1_g00005.1 112 RGEKHLLCEIHRRKTS 127
*************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MAMMVENSYG YASGGTAERI QLMMEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT 60 FVVWRPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE 120 IHRRKTSQVI PNQHSPFITH HPSPQIPFSG GASFFSLPPR IDAAATMDDH YWCESPPPRP 180 RVIPTTVDAQ VTALTEDNER LRRNNTVLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNSNL 240 PSFLQKQQQQ PPPLDYYNNA TVPNHSPPTS QSSISVLEDE TNHESNARKT KLFGVSLPSS 300 KKRSHNFSRQ SSKTRLVLDN SDLGLNLRTA STR
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |