PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00171.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 475aa    MW: 51633.1 Da    PI: 6.1894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00171.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16263310355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++hn+ ErrRR++iN+++ +L+el+P +      K +K+++L  A+eY+k Lq
  Rsa1.0_00171.1_g00004.1 263 EMHNISERRRREKINEKMKTLQELIPRC-----SKTDKSSMLDDAIEYVKALQ 310
                              58*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19258327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.197260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.32E-17263314No hitNo description
PfamPF000102.2E-13263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-20264317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-17266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MWGEDDIVEL LWKSGQVVPS SQTQRPSVPP SVLRGSGSGG GGGEERAPLP LPLPQPPPPP  60
LYPSDQNLFI REDEMVSWLH HHPIGEDDEL RAHLLYAGLI PFTQPQGSLP LTPPLPLQPP  120
PPPASVIYAL TAAERPIHLR RAVNLTSLSR LGVEAAAAPW VPPLTQVGSS STPLSESCLT  180
PATFTGGGFP QSLAVPRAVC GIPGPVVPET RIEPVQIQPA AAAETEAAAA EDERKRKERE  240
ETAADETEEA GGSMSRKRSR AAEMHNISER RRREKINEKM KTLQELIPRC SKTDKSSMLD  300
DAIEYVKALQ LQIQMMSPGG GMMPPMMYTP NMQQFMPPSA MDMNRPPFVP FPGTTFPTPP  360
AHLAGLCPPY PAPRYPFPSR VQQPDPVQNQ PQFPGYFNPY SQFVGLQQMQ QPPPPPTLPL  420
PPLPPPPPLP LQIQTTSQLS TSQASTSKAP EDQGNKPTGW LKRLGSPSIS TELKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255272RKRSRAAEMHNISERRRR
2268273ERRRRE
3269274RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00171.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775862e-45AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467782.10.0PREDICTED: transcription factor bHLH119-like
SwissprotQ9SVU71e-113BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A0D3A3N71e-145A0A0D3A3N7_BRAOL; Uncharacterized protein
STRINGBo1g017090.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-44bHLH family protein