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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00170.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 251aa MW: 27245.5 Da PI: 8.367 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.1 | 2.1e-33 | 26 | 84 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++v YkeClkNhAa+lGgha+DGCgEfmp+++++ +++++l+CaACgCHRnFHRr++++ Rsa1.0_00170.1_g00021.1 26 MGVCYKECLKNHAANLGGHALDGCGEFMPTPTATpTDPSSLRCAACGCHRNFHRRDPSD 84 5789*****************************99********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-27 | 28 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-19 | 28 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-30 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.23E-17 | 143 | 211 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 143 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.2E-27 | 153 | 210 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDLSSKHKRT LPNSPVAGQL TIAEEMGVCY KECLKNHAAN LGGHALDGCG EFMPTPTATP 60 TDPSSLRCAA CGCHRNFHRR DPSDHLSFLP SSPSGTESPP SQSLHRVASP VPCSYYTSAP 120 HHMLLSLSSG FPGPSDQDPT GVRSEHSSKG GMRKRTRTKF TPEQKTKMRA FAEKAGWKIN 180 GCDEKSVREF CSENGIERGV LKVWMHNNKY SLLSGKNREI LSMDHPRLCL NTQSCNNGGE 240 EGDNVGGSSS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-19 | 154 | 211 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00170.1_g00021.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 0.0 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456778.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
Swissprot | Q9SEZ1 | 1e-132 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A0D3CZB8 | 1e-162 | A0A0D3CZB8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H769 | 1e-162 | A0A3P6H769_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g109180.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-116 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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