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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00163.1_g00005.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
AP2 |
| Protein Properties |
Length: 227aa MW: 25232.5 Da PI: 7.9928 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00163.1_g00005.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 24.8 | 5.3e-08 | 5 | 25 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22
++++GVr+++ +g+WvAeIr+p
Rsa1.0_00163.1_g00005.1 5 KKFRGVRQRH-WGSWVAEIRHP 25
59*******9.*********96 PP
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| 2 | AP2 | 29.2 | 2.2e-09 | 63 | 89 | 27 | 53 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53
+++r++lg+f tae+Aa+a+++a+ +
Rsa1.0_00163.1_g00005.1 63 RKRRIWLGTFETAEDAARAYDEAAVLM 89
56*********************9765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MVQTKKFRGV RQRHWGSWVA EIRHPLLYHS SFFPFLCFVH LFPLADAFNL RLIRTIFYNM 60
HERKRRIWLG TFETAEDAAR AYDEAAVLMS GRNAKTNFPL NNNNTGDTSE RKTDISASPS 120
SSSLSSILSA KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSGW VMTLELGTSG 180
SSQEPTSTVS KEVVGPATDV GDGGEEGLMD EEEKVALQMI EELLNTN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ166623 | 1e-140 | DQ166623.1 Brassica juncea AP2 transcription factor (SHN1) gene, complete cds. |
| Publications
? help Back to Top |
- Taketa S, et al.
Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
[PMID:18316719] - Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
Int J Mol Sci, 2014. 15(11): p. 19499-515
[PMID:25350113] - Djemal R,Khoudi H
Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
Protoplasma, 2015. 252(6): p. 1461-73
[PMID:25687296] - Sadler C, et al.
Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
[PMID:26965486] - Sajeevan RS, et al.
Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
Front Plant Sci, 2017. 8: p. 418
[PMID:28421085]
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