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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00157.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 21085 Da PI: 10.4566 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 154.1 | 1.3e-47 | 36 | 158 | 51 | 170 |
YABBY 51 akasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrf 132 +k+ ++++ + s ++++ + +k+++++++s v+++e s+s+ss+++ e+ d+e+pr+pp irPPekrqrvPsaynrf Rsa1.0_00157.1_g00018.1 36 SKHWSFTSSNLTYSYSSRPSVFAIMKQHKQHITSAVTRKEYGSSSRSSNHFsttlVESVDREAPRMPP-IRPPEKRQRVPSAYNRF 120 444555555555667778889999**********99999998888888887444467889999**999.9**************** PP YABBY 133 ikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Rsa1.0_00157.1_g00018.1 121 IKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 158 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-42 | 43 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.16E-8 | 103 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-4 | 106 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MHNIVRFYYI RGKCTICKFV HTCDGEMWPL YQFALSKHWS FTSSNLTYSY SSRPSVFAIM 60 KQHKQHITSA VTRKEYGSSS RSSNHFSTTL VESVDREAPR MPPIRPPEKR QRVPSAYNRF 120 IKEEIQRIKA GNPEISHREA FSTAAKNWAH FPHIHFGLKL DGNKKGKQLD QTVAGQKSNG 180 YY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00157.1_g00018.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 1e-161 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450150.1 | 4e-85 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_018450151.1 | 3e-85 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 1e-72 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A0D3C8I3 | 6e-80 | A0A0D3C8I3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EPL4 | 5e-80 | A0A3P6EPL4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g009010.1 | 9e-81 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-71 | YABBY family protein |
Publications ? help Back to Top | |||
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