PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00149.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 345aa    MW: 39318.4 Da    PI: 6.6161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00149.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05178197120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp C k+F+r  n++ H+
  Rsa1.0_00149.1_g00017.1 178 FSCPLCFKTFNRYNNMQMHM 197
                              89*****************9 PP
2zf-C2H213.10.0003262284123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C  Cgk F  k + ++H +++
  Rsa1.0_00149.1_g00017.1 262 FACRRCGKAFAVKGDWRTHEKNC 284
                              78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66178205IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5178197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-6248282No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5249282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSNPACSNLF NNGFDNTNFN YSTSLSYIYN SPNSFYYPST TNPNYMPPTT TTTTSTFPNS  60
PPLREALPLL ISSPIRHQEQ QDQPFFMNTD HTTSSNFHDD PHDVTVDLHL GLPNYEVGGS  120
YIAPETTTTE EQYQDHHQEV EVTVESHLHD DDDPGDLYKG HHYWIPTPAQ ILIGPTQFSC  180
PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA  240
KPLKDFRTLQ THYKRKHGSR PFACRRCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR  300
SLKDHVKAFG NGHVPCGIDS FGGDHEDYYE AASDIEQQDD CNNNE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00149.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488109.10.0PREDICTED: zinc finger protein WIP5-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A3P6EIT80.0A0A3P6EIT8_BRAOL; Uncharacterized protein (Fragment)
STRINGBra030450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]