PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00145.1_g00031.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 282aa MW: 30406.8 Da PI: 7.2378

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00145.1_g00031.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.2e-14	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+++++ + k+ G+g+Wk I+r + k Rt+ q+ s+ qky Rsa1.0_00145.1_g00031.1 101 AWTEDEHKRFLLGLKKVGKGDWKGISRNFVKSRTPTQVASHAQKY 145 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.841	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-16	96	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-17	97	148	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-8	98	148	IPR001005	SANT/Myb domain
CDD	cd00167	1.63E-8	101	146	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-9	101	145	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-10	101	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAAVSSSSET GGGGGGTGTG TAEKGEIMLF GVRVVVDPMR KCVSLNNLSD YEKSSPDEEI 60 PKIGDGEADA TAAAAGYASA NDAVHIPSSS AGNRERKRGI AWTEDEHKRF LLGLKKVGKG 120 DWKGISRNFV KSRTPTQVAS HAQKYFLRRT NLNRRRRRSS LFDITTETVT GMHMEQDQGH 180 HPQDISSLPE TDISSGQQAM QVFTQVAVVP TRTENAPQIV PVTFQANPPF NLNADAAEVP 240 APLSLNLSLS FNNLNEQSNS RHSAFTMMPS FSDGDSNSIR VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00145.1_g00031.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451739.1	1e-171	PREDICTED: transcription factor MYB1R1
Refseq	XP_018451740.1	1e-171	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	3e-56	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0D3DQA8	1e-143	A0A0D3DQA8_BRAOL; Uncharacterized protein
STRING	Bo8g068220.1	1e-144	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-101	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]