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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00138.1_g00024.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
ERF |
| Protein Properties |
Length: 312aa MW: 34715.5 Da PI: 5.9479 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00138.1_g00024.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 61.3 | 2.2e-19 | 114 | 164 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr+++ +grW+AeIrd + r r +lg++ taeeAa ++ a+ +l+g
Rsa1.0_00138.1_g00024.1 114 KKYRGVRQRP-WGRWAAEIRDpF-----RrVRLWLGTYNTAEEAALVYDSAAIQLRG 164
59********.**********66.....45*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042991 | Biological Process | transcription factor import into nucleus |
| GO:0048364 | Biological Process | root development |
| GO:0048825 | Biological Process | cotyledon development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
METEKQLVLP KTKSTEHKTN TTRTEPDLTN HHQHHQPRIL RISVTDPDAT DSSSDEEEQR 60
LVSKRRRIKK FVNEVALDSG RTSQTEPKKR RKRAVTVKPE PASAPALPTT TTEKKYRGVR 120
QRPWGRWAAE IRDPFRRVRL WLGTYNTAEE AALVYDSAAI QLRGPDALTN FSSPPPSTDK 180
TSPPPPVKRK RKIKDDVASS SSASSDGVCS PVSVLRSPFA ADETAAVVVK EEEPSASASE 240
AFSDFSAPLF ADEDLFDFRS YVVPDYLGGD IFADTCTDMN FGFDFGSGLS DWHVDDHFQD 300
IGDLFGSDPM TV
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 63 | 67 | KRRRI |
| 2 | 87 | 91 | KKRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ckurshumova W,Berleth T
Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
Plant Signal Behav, 2015. 10(7): p. e993293
[PMID:26098229] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515] - Jeon J,Cho C,Lee MR,Van Binh N,Kim J
CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
Plant Cell, 2016. 28(8): p. 1828-43
[PMID:27432872]
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