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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00133.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 34505 Da PI: 5.4723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.5 | 1.6e-15 | 112 | 163 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ Rsa1.0_00133.1_g00010.1 112 QRMTHIAVERNRRKQMNEYLAVLRSLMPTS---YAQRGDQASIVGGAINYVKELE 163 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.80E-13 | 110 | 167 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-14 | 110 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.367 | 111 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-17 | 111 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-12 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-11 | 117 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MPLESVVYPQ DPLDYLSTCK DFTFQDLYYQ EEVVVAQDTK NNINKLGQEQ SLENDKEQDR 60 QWRDYHQYPL LPYLEEELGL PAIEMESPPP LQQRRKRRRT RSNKNVEEIE NQRMTHIAVE 120 RNRRKQMNEY LAVLRSLMPT SYAQRGDQAS IVGGAINYVK ELEHILQSME PKRITTTTHE 180 ANTSCSSLVD PFSDFFSFPQ YSTKSSLITE GSSSPAEIEV TVAEGHANIK IMVKKKPKQL 240 LKLVASIQSL RLTLLHLNVT TLDNSILYSI SVKVEEGSQL STVDDIAAAV NQIIRRIQEE 300 S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | QRRKRRR |
2 | 94 | 98 | RKRRR |
3 | 94 | 99 | RKRRRT |
4 | 112 | 123 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00133.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447843.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
Swissprot | Q9SK91 | 1e-158 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | M4DIQ0 | 0.0 | M4DIQ0_BRARP; Uncharacterized protein | ||||
STRING | Bra016377.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 1e-141 | bHLH family protein |
Publications ? help Back to Top | |||
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