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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00132.1_g00023.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bHLH |
Protein Properties |
Length: 303aa MW: 32301.5 Da PI: 6.168 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00132.1_g00023.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 27.1 | 7.4e-09 | 149 | 193 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L
Rsa1.0_00132.1_g00023.1 149 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 193
99***********************55......9**************998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MASNNNNPHD NLSDQTPSDD FFEQILGLPN FSASSSDGGL GGGGGAPPMM LQLGSGEEGG 60 HMGGLGGGSG PTGFHNQMFP LGLSLEQGKG PGFLRPEGGL GTGKRFSDDV MKPVFHGQPM 120 QQPAPPAPHQ PTSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPTVNKTDRA 180 AMIDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDMPL SSSVEDETSD GGRTPQPAWE 240 KWSNDGTERQ VAKLMEENVG AAMQLLQSKA LCMMPISLAM AIYHSQPPDT SSVVKPETNP 300 PPP
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Functional Description ? help
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Source |
Description |
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK352765 | 0.0 | AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01. |