PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00126.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 322aa    MW: 36268.4 Da    PI: 7.8693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00126.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13147193455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  Rsa1.0_00126.1_g00014.1 147 DHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 193
                              5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-17147211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-13148196No hitNo description
SMARTSM003533.2E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MATTMNVFST KWSSEMDIEE YSIIHQYHMN SLVGDFPQSL SSLDDMTNCY NFDASCDDDM  60
VEEKPSKILK TTHASQKLHP YTSYNPPQQS QPSSRILSFE KTGLKVVNHN SSNFTFSPKQ  120
EVGSPDLITR GTKRAQPLTR SHSNAQDHIL AERKRREKLT QRFVALSALI PGLKKMDKAS  180
VLGDAIKHIK YLQESVKEYE EQKKEKTMKS MVLVKKSQLV LDENHQLSSS SSEGNRDCSS  240
LNLPEMEFKV SGKDVLIKIL CEKQKSNLIK IMAEIEKLGL SITNSSVLPF GPTFDISIIA  300
QKTSDFDMKV EDVVKSLSCC LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00126.1_g00014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688347.10.0transcription factor bHLH18-like
SwissprotQ1PF171e-143BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A0D3C1A60.0A0A0D3C1A6_BRAOL; Uncharacterized protein
STRINGBo4g150960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-142bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]