PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00126.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30514.2 Da    PI: 7.7122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00126.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.1e-19111165256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tkeq   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Rsa1.0_00126.1_g00002.1 111 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 165
                              788899***********************************************98 PP
2HD-ZIP_I/II124.74.3e-40111200191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +e
  Rsa1.0_00126.1_g00002.1 111 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQE 196
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L+ +l
  Rsa1.0_00126.1_g00002.1 197 LK-TL 200
                              *9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.491107167IPR001356Homeobox domain
SMARTSM003892.1E-16109171IPR001356Homeobox domain
SuperFamilySSF466891.75E-18109175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-17111165IPR009057Homeodomain-like
CDDcd000868.19E-18111168No hitNo description
PfamPF000462.1E-16111165IPR001356Homeobox domain
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PfamPF021832.5E-9167200IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-23167210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVFDDSCNTG LVLGLGLSPT SNNYNNTIKR SSGYKFDPSL SLSLSGDPSM TVVAGGDLLC  60
RQTSSHSGVS SFSTGRVVKR ERDGGEESRE EEETTEKVMS DYHEDEGVSA RKKLRLTKEQ  120
SALLEESFKH HSTLNPKQKQ DLARQLNLRP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC  180
ETLTDENIRL QKEIQELKTL KLTHQPFYMH MPVSTLTMCP SCERIGGRSG GDTGGEGVGG  240
GSSVATTVVV DGATSKGAFS ISSKPHFYNP CTSSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00126.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478351.10.0PREDICTED: homeobox-leucine zipper protein HAT9
SwissprotP466031e-141HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A0D3C1B81e-163A0A0D3C1B8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CEB71e-163A0A3P6CEB7_BRAOL; Uncharacterized protein
STRINGBo4g151080.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-123HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]