 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_00124.1_g00030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
bHLH |
| Protein Properties |
Length: 325aa MW: 37187.6 Da PI: 6.4095 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00124.1_g00030.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.5 | 2e-12 | 57 | 99 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
Er+RR+++N++++ Lr+++P+ +Kl+Ka+i++ ++Y+++L
Rsa1.0_00124.1_g00030.1 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASIVKDSIDYMQKL 99
57*********************7.....7***************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MENLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSP ASSKNVVSER 60
NRRQKLNQRL FALRSVVPNI TKLDKASIVK DSIDYMQKLI DQEKRLEAEI RELESQSILV 120
ENPTRDYDCI NNNFMENQQQ DPSYNNVTRS KKFRQMDYTS GSSIARVHNQ SLIEVLEMKV 180
TWMGERTVVV CITCSKRRET MLQLCKVLES LNLNIVTTNF SSFSSRLSTT LFLQDFIGAL 240
TPEKTPLTIQ RFTGPLQRHA SATHPSSSPH HFNRIASLDR NRELIQDPSQ QDSIEQTLTA 300
GHHPQKRSDD ARVKAGWLLT DKNAA
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ630482 | 1e-116 | AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930. |
| GenBank | AK117730 | 1e-116 | AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21. |
| GenBank | AK176201 | 1e-116 | AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06. |
| GenBank | AK176276 | 1e-116 | AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11. |
| GenBank | AK228201 | 1e-116 | AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05. |
| GenBank | BT005869 | 1e-116 | BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds. |
